NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss77933049           
Submitter
HandleHGSV
Submitter SNP IDCor12156_DIV_20070510.chr8_75909677-75909696_2
RefSNP(rs#)rs55730814
Submitted Batch IDNA12156-Fosmids-20070510-DIPs
Submitted DateOct 15, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 15 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodNA12156-FOSMIDS-DIPS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed Allele-/CTGATGATTCACATTCTC
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality orientation DIPsize105291246 96-97 68 forward -18

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss77933049|allelePos=201|len=556|taxid=9606|alleles='-/CTGATGATTCACATTCTC'|mol=Genomic
 TGGGACCTGG AAGCTGTGTG GCCCTGAGCA AGGAATTCCC ATCACTGGTT GCACTTTCTG
 GTTGGGTTAC AACATGTGTG TGTTCTTCTG ACCATGAGAT GCCTAGAATT TATGTGACAA
 ATTACTCTCC AATTGCTCTA CTTCTGTGGA GTTAACTTGG CAGAGTCAGT GGGCACATTC
 TCCTGATGAT TCACATTCTC
 N
 ATGAACTAAG CTGCTTGTAG GTCACATAAA TGTGTGTTGT AAATGCAGAC GATGTTGTTA
 TAATGGAAAG GGATTCATTT TTTTCATCTT TGTTTCATTT ATATTCACTG CAGTAAACTC
 ATCCAGTCTT ATGGATTAAA ATACCACTTA TATGCTGATG ATGTTTCAAA TTATATTTAT
 AGGCCTCTCA GTTGAATTTT AGACTAATTT ATTCACCTAC CTACTTTTCC AAAATTGAGC
 TCCAGATATT CACAACCTTA CCCCCATCCC TTCAAATCTT ACTTTAGAAT TTTTTTTATC
 TTTTTAAAAA TTTTGGATTT TCAGAAAGTT TCATACAATT CTCACGTGTT ACATT

  Submitted Frequency for ss77933049 back to top
There is no frequency submission for ss77933049.


  dbSNP summary of Genotypes for ss77933049 back to top
No sufficient data to compute Hardy-weinberg probability for ss77933049.


  Submitted individual genotype for ss77933049 back to top
There is no individual genotype data for ss77933049.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement