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Submitted SNP(ss) Details: ss68962602           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP01473230
RefSNP(rs#)rs2295767
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68962602|allelePos=65|len=129|taxid=9606|alleles='C/T'|mol=Genomic
 TGTTACTTGT GAAAGGAAAA ACTATATTAA CATTAACACA CTAACCCCCT
 CCTCAAAATT AAAA
 Y
 GTGGATTGAT CCAG
 AAGAGGTATA CCAAACACTG AAAGGCATCA CGGGTACACC AAGGAAACAG

  Submitted Frequency for ss68962602 back to top
There is no frequency submission for ss68962602.


  dbSNP summary of Genotypes for ss68962602 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.84166664
T=0.15833333C/C=0.71666664
C/T=0.25000000
T/T=0.03333334
Pr(chiSq=0.231,df=1)
=0.655		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090C=0.86666667
T=0.13333334C/C=0.73333335
C/T=0.26666668
Pr(chiSq=0.265,df=1)
=0.655		Genotype
Freq.
HapMap-JPT9090C=0.83333331
T=0.16666667C/C=0.68888891
C/T=0.28888890
T/T=0.02222222
Pr(chiSq=0.072,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120C=0.58333331
T=0.41666666C/T=0.53333336
C/C=0.31666666
T/T=0.15000001
Pr(chiSq=0.566,df=1)
=0.479		Genotype
Freq.

  Submitted individual genotype for ss68962602 back to top
There is no individual genotype data for ss68962602.

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