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Submitted SNP(ss) Details: ss68962600           
Submitter
HandlePERLEGEN
Submitter SNP IDPGP05022835
RefSNP(rs#)rs2244693
Submitted Batch IDPGP_29-JAN-2007
Submitted DateJan 30, 2007
Publication CitedN.D.
First entry to dbSNPJan 30 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodPERLEGEN-600K
Ascertainment Samplesize1
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss68962600|allelePos=65|len=129|taxid=9606|alleles='T/C'|mol=Genomic
 AAAGGCCCCA CGGCTGCAGA CGCGGGAGGC CCCGAGCCGG AGACGCTCGT
 GTGAACACAG GCGC
 Y
 GCTCCTGTCA CGGC
 CCCTTACTCG CCTTGCTGAC TTTAAACAGT CTCTCCTCGG TGTTCTCCTT

  Submitted Frequency for ss68962600 back to top
There is no frequency submission for ss68962600.


  dbSNP summary of Genotypes for ss68962600 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120C=0.64999998
T=0.34999999C/T=0.46666667
C/C=0.41666666
T/T=0.11666667
Pr(chiSq=0.039,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		9090C=0.78888887
T=0.21111111C/C=0.62222224
C/T=0.33333334
T/T=0.04444445
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-JPT9090C=0.80000001
T=0.20000000C/C=0.62222224
C/T=0.35555556
T/T=0.02222222
Pr(chiSq=0.556,df=1)
=0.479		Genotype
Freq.
HapMap-YRI120120T=0.58333331
C=0.41666666C/T=0.56666666
T/T=0.30000001
C/C=0.13333334
Pr(chiSq=1.648,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss68962600 back to top
There is no individual genotype data for ss68962600.

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