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Submitted SNP(ss) Details: ss342200105           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr6-2948553
RefSNP(rs#)rs3188238
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4544
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342200105|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 ATTGCCGCCC CTACTAACAT AACCCAGACC CAGAGCAGCA ATTTCAGATC CTAGGAAACA
 TCTCCCGTGC AGACACACAA ACACACGGAG TGAATGCGGC ATCCCACAAA TGGGCCCTTT
 ATTTCTGAAC TGCCACCACT GCACGGATAA GGCCACTTGG GTTGCAGGCA CACTGTGGAG
 TGTCAGGGGA CAGAGAGGAG AGGGGCTGCA CACCAAGACT GCCCTGTCCT CACGGAGAGG
 AAAAGCGGCC
 R
 CAGAAGAGAA TCCCGTTGGT CTTGCTGTGC TGGATGAAGA AAAGGAAGGG GTGGTCGGCG
 CAGAAGCGGG GGACGAATCT GGCACACCGC ATCATCATGA TGGCAGCTGT GGCGGCTGCA
 GCCTCCGTGC CTTCCTCATT GACCTCCACA AAAGACTTGT GCACGACCTT GGACAGAGAC
 AGGTCTGTCT GGGACATTCC AGAGAAGTCT GCCTTGCCCA GCTCGAAGGC ATCAGTCATG
 CCCAGGTTGC

  Submitted Frequency for ss342200105 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006G/G=0.99984598
A/G=0.00015400
A/A=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342200105 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45444544G=0.99977994
A=0.00022007G/G=0.99955988
A/G=0.00044014
A/A=0.00000000
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342200105 back to top
There is no individual genotype data for ss342200105.

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