Submitted SNP(ss) Details: ss221122418

Submitted SNP(ss) Details: ss221122418

Submitter
Handle	1000GENOMES
Submitter SNP ID	pilot_1_YRI_2932101_chr4_106794718
RefSNP(rs#)	rs17036076
Submitted Batch ID	phase_1_vqsr_v2b_sites_june_2011
Submitted Date	Jul 20, 2011
Publication Cited	N.D.
First entry to dbSNP	Apr 22 2010 12:00:00:000AM

Resource Links
GenBank Accession	NC_000004
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	LOW_COVERAGE
Ascertainment Samplesize	118
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence

Variation
Frequency Submission	population count: 1
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
depth.cov:194

Fasta sequence (Legend)

 GAAAGTATGT GTTAAGACAG ACAGCATGTC ATCAAATGTT TTCATATCAT CAAAGAATTT
 TCTTTTGTAA TGTGCTGGAC CAATATGGTC TGTGCTATTT TAAAAAATAT CTGTTTCATT
 TGAGTTATGA AAATAATTTC ATATATATTT TAGGTTAAAG ACAATACCTT TAACAGAGAA
 GAAAAGCTGT TTAGAGCTTT
 R
 GAAAAGACTG TGAGGCTTTG TGTGAAGAAC ATTTCACTCT GTCTTCAACA CATACAGGTA
 GGTGAGACAC AACTGTTTTC AGTGTTCTAC AGGAACATCT GATACAAACC ATTGATTTCC
 ATGGTTGTTT TGAAGAGTAA ATGTGACTGT TCCTTCCTTT ATGTTATGAC ACCGGATCAA
 AATTGGAAGG CTGCAAACTG

Submitted Frequency for ss221122418

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
pilot_1_YRI_low_coverage_panel - WEST AFRICA	118	A=0.97457600	G=0.02542400				pilot_1_YRI_mar_2010	1000GENOMES

dbSNP summary of Genotypes for ss221122418

No sufficient data to compute Hardy-weinberg probability for ss221122418.

Submitted individual genotype for ss221122418

There is no individual genotype data for ss221122418.

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