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Submitted SNP(ss) Details: ss17138479           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr6.NT_034880.3_2888964
RefSNP(rs#)rs318426
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA505s19600402228503.F -175 57

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss17138479|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 CCTTGCCCAG CTCGAAGGCA TCAGTCATGC CCAGGTTGCG CAGGACACTC TCCATGTCGT
 AGCTTTCCTC TAGTTTAAAC CGCGGGAGGG ACACTTCCAC CTCCTCTTCA TCCATCATGT
 CCAGCCTCGT CCATTCTACG AACTTCTCGT AAGTGAGTTC TTTCTCCACC TAGAGGGAGA
 CAGTTGAAGA CTTTAAGACC
 Y
 AGGGTGCTGC TGCCCAGCAG GGCCCTGTGC TATGCTGTGG ATGCCAGACA CCAGTGGCAG
 CGTGGCTATG GTCAGCAGCG CTCCAGTGTT AAACGGCTGA CCGCAAAGTA GGGACAGCAG
 CCACAGCAGA CACCCCCGAG TGGCTCCTTG CTAGCACGCC TCGCTCACAG CTTAGCTGTT
 ACCGTTCTCA AGTCAGTGGT

  Submitted Frequency for ss17138479 back to top
There is no frequency submission for ss17138479.


  dbSNP summary of Genotypes for ss17138479 back to top
No sufficient data to compute Hardy-weinberg probability for ss17138479.


  Submitted individual genotype for ss17138479 back to top
There is no individual genotype data for ss17138479.

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