NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss166030411           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr6_2898251
RefSNP(rs#)rs2244693
Submitted Batch IDNA20431_snpassay_chr6
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss166030411|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AAGCTAGAGA AAAGGAGGAA ATGTCCGCTA GAAGATGGCA CGCCATATCT GGAGTCTGAG
 CTTTAAGACC TTGATCGAGC CTGAGGGCTG CAGCTTCAGA CTTGCCCTGT AGGTGGCAGG
 GCGGATGCCA GGCGCCCAGG GACACGAGGC CACCCAATGG ATGTCAAGCA GGAGGGGCAG
 GGACAGAAAG GCCCCACGGC TGCAGACGCG GGAGGCCCCG AGCCGGAGAC GCTCGTGTGA
 ACACAGGCGC
 Y
 GCTCCTGTCA CGGCCCCTTA CTCGCCTTGC TGACTTTAAA CAGTCTCTCC TCGGTGTTCT
 CCTTGTCAAA CTGTTCATCC CAGTTTCCTC TGAAATAGAC AGCATTCACC AGAACCAGCC
 TTGTCAATGG ATCCACTGAG CCCGGAGAGA GCAACTCCGC AATTTTACCT GAGCGGAAGA
 ATTCAAGACC GCATTAGATA GGGGCGGCTG CGGATCCCCG ACACATCAGG AATCGGCTGG
 GGCCTTCTCC

  Submitted Frequency for ss166030411 back to top
There is no frequency submission for ss166030411.


  dbSNP summary of Genotypes for ss166030411 back to top
No sufficient data to compute Hardy-weinberg probability for ss166030411.


  Submitted individual genotype for ss166030411 back to top
There is no individual genotype data for ss166030411.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement