NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss113803976           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_1292408_chr6_2898251
RefSNP(rs#)rs2244693
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 18 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:109

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss113803976|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GGAGTCTGAG CTTTAAGACC TTGATCGAGC CTGAGGGCTG CAGCTTCAGA CTTGCCCTGT
 AGGTGGCAGG GCGGATGCCA GGCGCCCAGG GACACGAGGC CACCCAATGG ATGTCAAGCA
 GGAGGGGCAG GGACAGAAAG GCCCCACGGC TGCAGACGCG GGAGGCCCCG AGCCGGAGAC
 GCTCGTGTGA ACACAGGCGC
 Y
 GCTCCTGTCA CGGCCCCTTA CTCGCCTTGC TGACTTTAAA CAGTCTCTCC TCGGTGTTCT
 CCTTGTCAAA CTGTTCATCC CAGTTTCCTC TGAAATAGAC AGCATTCACC AGAACCAGCC
 TTGTCAATGG ATCCACTGAG CCCGGAGAGA GCAACTCCGC AATTTTACCT GAGCGGAAGA
 ATTCAAGACC GCATTAGATA

  Submitted Frequency for ss113803976 back to top
There is no frequency submission for ss113803976.


  dbSNP summary of Genotypes for ss113803976 back to top
No sufficient data to compute Hardy-weinberg probability for ss113803976.


  Submitted individual genotype for ss113803976 back to top
There is no individual genotype data for ss113803976.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement