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Submitted SNP(ss) Details: ss11233059           
Submitter
HandleSC_JCM
Submitter SNP IDchr4.NT_016606.15_7042423
RefSNP(rs#)rs2353398
Submitted Batch IDTSC_200306
Submitted DateJul 03, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTSC_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:p4_2a388d01.p1cSCFposition:202quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11233059|allelePos=794|len=4541|taxid=9606|alleles='T/A'|mol=Genomic
 ATATTAAGGA TTTCCATTAC ATGAAGAACA CCATGGAAAA CGTTGACAAA CTGATGAAGG
 CTGGAGaaat tatttaaaat ttctaaaatt aataaGTGAT TAATATCTGA AATATATCAG
 AAAGTCTTAC AAATCAAACA ATAACAACAA AAACAGACCA TAATTTTTTT AAATGGCCAA
 AATAAGATCC TCAGAAGAGA TAAACAAAAG ACAATCACAT TAGAAATAGa gtcattaaga
 aattacagaa actcaaaaat gatgagatat tacattacac ctattgtatt tgaaaaatca
 gaaaacatca tcatagctca tgatgtcaga gacatgggaa cacttgtgtg ctgctgaaag
 gagggtagaa gagtgtgtac aaactatcag tgtttactca aattgggtat acacttctct
 atgacccagc aatctcattg ttgggtttca atattccaaa gacaaggccg ggcgtggcgg
 ctcacgcctg tgattccaac attttgggag gtcaaagtgg gtggatcacc tgaggtcagg
 agttcgagac cagcctggcc aacatggtga aaccctatct ctactaaaag tacaaaaaaa
 tcagccaggt gtggtggtgc gtgcctggag tcccagctgc ttgggaggct gaggcaggag
 aatctcttga acccaggagg cacagattgc agtgagccga gatggggaca ctgcactcca
 gtctgggtga cagagtgaga ctccatctca aaaaaaaaaa aaaaaaaaga atattccaca
 gacattttta tac
 W
 taaaagtgga atgaacaata ttattcactt caatgttatt tgatagtaaa ggattggaaa
 cagtctaagt atccatttct gagggaatgc ataaataaaa aatgagagat actaccataa
 aatgttacat ggaggctaaa aatgaaagga ttgaaagtac acacagcaac gtggatggat
 cttaaaatat aatgttgaag gaaaaacagt aaataacata attgtatata tagccaaata
 tatataaata tttatgtaaa ttaaaaatac acaggttggg tgcagttgct catgcttgta
 atgccagcac ttcgggaggc ctaggcagga ggattgcttg agcccaggag tttgagacca
 gcctgaccaa gatggccaga cttcatccgt acaaaaaata aaaaataaat tagccaggta
 tggtggccta cgcctgtagt ctcagctact ggagaggctg aggcaggaga ctcttttaag
 cccaagattc aaggcactat gattacacca ctgcactcca acctgggcaa cagagcgaca
 ccccatctct aaaaatatat gtatgtatac atagacttgt gatacatcca tacaatgaaa
 tacgactcaC TAGACTAggc cctccatatc cacaggttct gcatcctcag attctaccaa
 cttccagtag aaaatattca gaaaaaaaaa tttaaaaaac cacaataaca ataaaataac
 agcaaagaaa aataacaata aaataatacc aataaaaata tagtataaca actatttaca
 tagcatttac attgtgttag gtattataag taatctatag atgatttaaa gtatatgaga
 ggatatgcat aggttatatg caaatactgt gccattttat ataagatact cgagcattta
 caaattgtgt acggggagtc tggaggggaa ctcttggaac cactcgatat attctgaggg
 atgactTTaa taataaagaa tgaactactg atgcatgcaa caacttggat agatttcgtg
 ggaattgtgc tcagcagaaa aaaagccaat ctcaaaaggt tggcatacaa atccaagaaa
 tacagagaac ctcagataga tactatataa aacaatcatc cccaagtcac atagtcaaca
 gattcaccaa cgccaacaaa aagaaaaaaa tcttaaaggc agctagagag gaatcaagtc
 acatacagag cgagcttcat caggcagacc tctcagcaga aatcttacaa gccagaagat
 attgagggcc tattttcagc atctttaaag aaaagaaatt ccaaccaaga atttcatatc
 ctgccaaaat aagcttcata agtgaaggag aaataaaatc ctcagacaag ctaatattga
 aggaatttgt ttcaactaga tcagccttcc atgaggttct tgaaggagtg ctaaacatgg
 aatcaaaaga ataacacctg ctactggcta ggcgcagtgg ctcacacctg taatcccagc
 actttgagag gccaaggcag gcggatcacc tgaggtcggg agttcaagtc cagcctgacc
 aacatggaga aaccctgtct ctactaaaaa tacaaaatta gctgggtgtg gtggcatatg
 cctgtaatcc cagctacttg tgaggctgag gcaggagaat tgcttaaacc tgggaggcag
 aggttgcaat gagcccagat tgcaccattg cactcctgcc tgggcaacaa gagtgaaact
 ccgtcaaaaa aaaaaaaaaa aaagaataac acctgctacc acacaaacac atgtaagcat
 atagcccaca ggcactataa agtaactaca caatcacaca atcaagtcta tataacaacc
 agctaaaaat atgatgacaa gatcaaaatc acacatatca atattaacct taaatgtaaa
 tggactaagc acccccactt ggaagacatg gagtggaaag ctaaataaaa aggcaagatc
 caacctgttt aatggcattc acagaatcaa agtaaaggaa tgaagaacaa tctaccatgc
 aaacagaaac aaaaggagaa aaggagtcac tattcttgtA TATatttgtg tctctgccca
 aatttcatgt tgaattgGAG GAGGTGCCTG CTtgtgtgtc acctctttcc cctttatttt
 ctctctctct ctctcctgtc accatgtgaa gaaggtcttt gctccccctt tgccttctgc
 tatgattgta aggttcctga ggccacccag tcatgcttcc tgctaagctt ggtgaattga
 attgtgagtc cattaagcct ctttgcttca taaattatcc agtcttaggt agttctttat
 agcagtgtta aaatggacta atgcaAcatt acataatgat acagggtaca atccaacaaa
 aaaacttaac tatcttaaat atatacacac ccaacatcag agcacacaga ttcataaaat
 atgttatttg tggcctacaa aaagacttag acaaccacac agtaatagtg agagacttca
 acaccctact gacagcatta gactgattat taaggtagaa aactaaGATt ttctgcatat
 ggctagccag ttttcccagc accatttact gaataggaca tccttttccc attgcttgtt
 tttggcaggt ttgttgaaga tcagatggtt gtagatatgt ggtgtcattt ctgaggtctc
 tgttctgctc cattggtcta tttgtctgtt ttggtaccag taccatgctg ttttggttac
 tgtagccttg tagtatagct tgaagtcagg tagcatgatg cccccagctt tgttctcttt
 gcttaggatt gtcttggcta tatggggtct tctctgattc catatgaaat ttaaaatagt
 tttttctaat tctgtgaaga atgtcaatag tagtttgatg ggaatAAAAC CATCAAATAA
 GAACAAATCA ACCCCACTGC Taccatggaa tactacacag ccataaaaag aatgcagtca
 tgtcctttga agcaacatgg atggagctgg aggaaattat cctatgcaaa ttaatgcagg
 aacagtctcc taagcaaatt aacataggaa cagaaaacca aataacacat gttctttctc
 ataagtggga gctaaagatt ggctactcat gaacataaaa tggcaacagt agacactgga
 gactactaga tggaggaggg agttgacatg aaaaactacc cattgagtcc tatgctcact
 acctgggtgc aatataccca tataacaaat ctgcacatgt acttcctgta tctgaaataa
 aagttgaaaT TTAAATTTTT AAATTtttat ttatttattt atttatttTA ATTTTTACTA
 TCATTATTAt tttttttttt tttcttgaga cagagtttcg ctctgtcgcc caggctggag
 tgcagtggcg ccatctcggc tcactgcaag ctccgcctcc cgggttcacg ccattctcct
 gcctcagcct cccgagtagc tgggactaca ggcacccgcc accatgccca gctaattttt
 tgtatttttt tagtagagac ggggtttcac cgtgttagcc aggatggtct caatctcctg
 accttgtgat ctgcccgcct cagcctccca aagtgctggg attacaggca tgaAAAGAAT
 TTTAAATATT AAAAAGGTAT CGACTACTTG ATAGGTACTG TTCTTAACAA GAACTTTTGG
 GAAGAATTTT ACAATCCATA AAACGTA

  Submitted Frequency for ss11233059 back to top
There is no frequency submission for ss11233059.


  dbSNP summary of Genotypes for ss11233059 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU120120T=0.53333336
A=0.46666667A/T=0.56666666
T/T=0.25000000
A/A=0.18333334
Pr(chiSq=1.149,df=1)
=0.294		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8282A=0.71951222
T=0.28048781A/T=0.56097561
A/A=0.43902439
Pr(chiSq=3.005,df=1)
=0.100		Genotype
Freq.
HapMap-JPT8888A=0.80681819
T=0.19318181A/A=0.68181819
A/T=0.25000000
T/T=0.06818182
Pr(chiSq=1.725,df=1)
=0.200		Genotype
Freq.
HapMap-YRI120120A=0.92500001
T=0.07500000A/A=0.85000002
A/T=0.15000001
Pr(chiSq=0.057,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss11233059 back to top
There is no individual genotype data for ss11233059.

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