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Submitted SNP(ss) Details: ss108200393           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_64874_chr1_54756695
RefSNP(rs#)rs4927134
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:141

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108200393|allelePos=201|len=401|taxid=9606|alleles='A/C'|mol=Genomic
 TCAGAACTCT CCCTGCTCCA ATATCCTCCC TTGCCTTAAG CCAAAGTTTC TAATAAGAAA
 CAGGGCTGTG TAGAGATGGG GCGAAGTGCC CCCCTTCTTT ATTCCAGGGC ACACCATTAC
 TATGCTCTCC CACTTGTAGG TTTTGGTACA TGCTGTGCCC CTGCTCCTAA TGCCCGGTCC
 ACCTTCTCTG CCTTTAAGAT
 M
 ATGCAGAGTG GCATTGTCCA GTAGAATGTC CTGAATGACG GATATGTTCT ATATCCCTAC
 TATCCCATAT GGTAGCCATG AGCCACATGT AGCTGTTGGG TCCTTGAAAT ATGACTAGTG
 CAACTGAAGG GCTGAATTTT TAATTTATTT ACTTTTAATT CATTTAAATT TAAATAGCCA
 CATGTCGCTA GTGGCTATTG

  Submitted Frequency for ss108200393 back to top
There is no frequency submission for ss108200393.


  dbSNP summary of Genotypes for ss108200393 back to top
No sufficient data to compute Hardy-weinberg probability for ss108200393.


  Submitted individual genotype for ss108200393 back to top
There is no individual genotype data for ss108200393.

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