>gnl|dbSNP|ss80700090|allelePos=390|len=627|taxid=9606|alleles='T/C'|mol=Genomic
CCCAGGACTA CCCCAAGACA CAGAGAGGGT AACCCAGGCT GCAGTGGCAC TCCATGCTGT
GGCACTCCGC TGGCTGCTGG CTTTTTCATA TCCCTGCAGG ATACTCTGAA CCATGGAAGG
AGCCTATGCA AGTGAAGCAT GCCCTGAAGC TTAAGCTTAA GCTTATTAGT TTCCAGGTAA
ATTCACCACT GCTGTCAACA CATAAGGATC CGTTGATCCT ATAAGGCAGG GACAAATTGT
TCAACTGAAG AGTTTGATCC ACAGGAACAA AGGATTTGTT CCTATAATCC TTCCATGGCC
CAGACAGTTC GTATTATTAC CAACATTTAC AGGTCGGGAA ACTAAGGATC ATGGAGAGAG
GTATCTTTTC CCAAAGCCCC ACAGCCAGA
Y
AGTGGGTAGG AGTGCCAAGA TTCCCACCAG CCTTGCCCTT TGCACACACT GAGGTTTGCA
GCCACTAGTT CCATTGTTGG TCTTTCTGGC CAGGAGAGGA CGTGAGAGAG CAGAGGAGAA
GCTTTGACAA CGGAGGTGAT GGAGAACCTT GGAAGTTCCT CCTCATAGCC TTCCTCCTGC
CCTGACTTCC CATCAGCTGA AGAGGGTCTC CCCTTCTCCA CATGCATATT TGTTTGT
Population ID
-Class | Total
Sample
(2N) | Founder
(2N) | Major
Allele
Freq. | Minor
Allele
Freq. | Genotype
Freq. | HWE Goodness of Fit | Data
Source | | HapMap-CEU | 226 | 226 | T=0.65486723
| C=0.34513274 | T/T=0.45132744
C/T=0.40707964
C/C=0.14159292
| Pr(chiSq=1.118,df=1)
=0.294 | Genotype
Freq. |
HapMap-HCB
- EAST ASIA | 86 | 86 | T=0.66279072
| C=0.33720931 | C/T=0.53488374
T/T=0.39534885
C/C=0.06976745
| Pr(chiSq=1.662,df=1)
=0.200 | Genotype
Freq. |
| HapMap-JPT | 172 | 172 | T=0.73255813
| C=0.26744187 | T/T=0.53488374
C/T=0.39534885
C/C=0.06976745
| Pr(chiSq=0.007,df=1)
=1.000 | Genotype
Freq. |
| HapMap-YRI | 226 | 226 | C=0.72566372
| T=0.27433628 | C/T=0.49557522
C/C=0.47787610
T/T=0.02654867
| Pr(chiSq=6.766,df=1)
=0.010 | Genotype
Freq. |
| HAPMAP-ASW | 98 | 98 | C=0.56122446
| T=0.43877551 | C/T=0.59183675
C/C=0.26530612
T/T=0.14285715
| Pr(chiSq=1.993,df=1)
=0.200 | Genotype
Freq. |
| HAPMAP-CHB | 82 | 82 | T=0.67073172
| C=0.32926831 | T/T=0.48780489
C/T=0.36585367
C/C=0.14634146
| Pr(chiSq=1.209,df=1)
=0.273 | Genotype
Freq. |
| HAPMAP-CHD | 170 | 170 | T=0.64117646
| C=0.35882354 | T/T=0.43529412
C/T=0.41176471
C/C=0.15294118
| Pr(chiSq=0.939,df=1)
=0.343 | Genotype
Freq. |
| HAPMAP-GIH | 176 | 176 | T=0.73863637
| C=0.26136363 | T/T=0.54545456
C/T=0.38636363
C/C=0.06818182
| Pr(chiSq=0.000,df=1)
=1.000 | Genotype
Freq. |
| HAPMAP-LWK | 180 | 180 | C=0.66666669
| T=0.33333334 | C/T=0.48888889
C/C=0.42222223
T/T=0.08888889
| Pr(chiSq=0.900,df=1)
=0.371 | Genotype
Freq. |
| HAPMAP-MEX | 100 | 100 | T=0.61000001
| C=0.38999999 | C/T=0.54000002
T/T=0.34000000
C/C=0.12000000
| Pr(chiSq=0.910,df=1)
=0.343 | Genotype
Freq. |
| HAPMAP-MKK | 286 | 286 | C=0.65034968
| T=0.34965035 | C/T=0.50349653
C/C=0.39860141
T/T=0.09790210
| Pr(chiSq=1.640,df=1)
=0.200 | Genotype
Freq. |
| HAPMAP-TSI | 176 | 176 | T=0.63636363
| C=0.36363637 | T/T=0.43181819
C/T=0.40909091
C/C=0.15909091
| Pr(chiSq=1.186,df=1)
=0.294 | Genotype
Freq. |
