NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss80700089           
Submitter
HandleHGSV
Submitter SNP IDCor18507_SNV_20070510.chr5_160719893
RefSNP(rs#)rs58738829
Submitted Batch IDNA18507-Fosmids-20070510ab
Submitted DateNov 26, 2007
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodNA18507-FOSMIDS
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality63978364 438 42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80700089|allelePos=501|len=1001|taxid=9606|alleles='G/A'|mol=Genomic
 TGCGGTGGCT CATGCTTGTA ATCCCAGCAC TTTGGGAGGC TGAGGCAGGT AGATCACGAG
 GTCAAGAGAT CAAGACCATG CTGGCCAACA TGGTGAAACC CCATGTGTAC TAAAAATACA
 GAAATTAGCT GGGCATGGTG GCAGGTGCCT GTAGTCCCAG CTACTCAGGA AGCTGAGGCA
 GGAGAATCAC TTGAACCCCG GAGGCGGAGG TTGTGCAGCA AGGCAAGATT GTGCCACTGC
 ACTACAGCCT TGGCGACACA GCGAGACTCC GTCTAAAAAA AAAAAATTGT AAAAAGATTA
 TGTATTTCAT AGAGTAGGCT ACTGAAAAGA CCTTGCAAAT GACAAATCCT GTAGCACTGG
 ACACTCCTGT TACCTAGGTT GTAATCTGTA ACTATTATAT TCCATTAAAA GCAACAATGG
 CTCTTTAGAA AAAAAAATGA CTGATTCCCA GTCTGGGATA GGAAGAGTAC AGGATGAGCT
 TAGAATATTT TATCATATTA
 R
 AAAGCAAGGA AGAAAACAAA GAACACTAGG TTTGTATATA AGAAGGTTCA GATGTTGATG
 TAAAGAGGTT CCCAAGAGGC AAAAATAAGG GGATAATATG GATATCAATA AAAATGGCAT
 CTGCATGGAT CATAATACTT GTAATATGTT TATTTCTACA AGTTGTTCTC TTTTTCTCTC
 TCTCTCTTCA ACAGTCAACA CTGGATGATA CTACAGAACC AATTTATTAT TTTAAAAACT
 GGCAAATACG GAGCATAAAG CCTTGTCCAT TCTCAGGGTA ATAAAATCTT TGAAATAAGG
 GAAATTGTTT TTATGTAGAA ATATTCCAGC TAAAATATTA AGAAAGAACA ATAGAATGAG
 AATATGACCA TTCTCTGAGG TGTGATGAAT AAATGAATTG AGGCTGCTAA CACCACAAAA
 AGAGAGGCAA TTAAATGTTA CGTATTTCCT GATGCAAATA CCTTTCTCAT TTTGAATTAT
 TTTGGTCAAA AAATACAGTA

  Submitted Frequency for ss80700089 back to top
There is no frequency submission for ss80700089.


  dbSNP summary of Genotypes for ss80700089 back to top
No sufficient data to compute Hardy-weinberg probability for ss80700089.


  Submitted individual genotype for ss80700089 back to top
There is no individual genotype data for ss80700089.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement