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Submitted SNP(ss) Details: ss46531285           
Submitter
HandleABI
Submitter SNP IDhCV15980139
RefSNP(rs#)rs375025375
Submitted Batch IDxplore_hum_chrX_2_rev
Submitted DateJul 22, 2005
Publication CitedN.D.
First entry to dbSNPJul 22 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleG/TT
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss46531285|allelePos=301|len=601|taxid=9606|alleles='G/TT'|mol=Genomic
 CAGTGCTGCT TTTGGTTATA TGAACGTGAA GCCATGTTCT GTGACTGCTC ACCTAATTTT
 TAGTTTTTAC AAAGGTGCAT TTTTGTGTAG ATAGTTGTTA AATTGATCTC CTTGTGTGGG
 GGACAATCAG TGGAGCTTTC TATTCTGCCA TTTTGCTCTC TGTTTTTATT TCTCTAATCT
 GTTCTTTATT CTTCTTTTCT TTTTTCCTTG TTTTTGCATT AATCAATAAT TTTTGTTATT
 CCATTTTATC TCCTCAGTTG GATTATTAGC TACAACCCTT GATTTTGCTT GGGGCTTTTT
 G
 CTTTCATATT TATAGTTTAC AACTTTGGCT TATAACATTG TTCCTCCAAG TAACCATATA
 AAAATACATA TATATTACAA GAACACTGCA ACAGTATACT TCCATTTTTC TTCTTCTGAC
 CTTTGCCTTA GTTTTATCAT CCATTTTACT TTTGTGTTTG TTATAAGCCC CAAATTTATT
 ATTATTTCTT ATAAACAGTA AATTATTTTT AAAAAGATTT AGATTATGAG AAAATGTCTT
 ATATGTTGTT ACCAACTCTG TGGCTCTCCA TTTCTTTGTA TAGATTCAGA TTTCTATCTT

  Submitted Frequency for ss46531285 back to top
There is no frequency submission for ss46531285.


  dbSNP summary of Genotypes for ss46531285 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		7272T=0.76388890
G=0.23611110T/T=0.69444442
G/G=0.16666667
G/T=0.13888890
Pr(chiSq=13.615,df=1)
=0.001		Genotype
Freq.
HapMap-JPT7878T=0.76923078
G=0.23076923T/T=0.69230771
G/T=0.15384616
G/G=0.15384616
Pr(chiSq=12.523,df=1)
=0.001		Genotype
Freq.
HapMap-CEU116116G=0.99137932
T=0.00862069G/G=0.98275864
G/T=0.01724138
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss46531285 back to top
There is no individual genotype data for ss46531285.

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