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Submitted SNP(ss) Details: ss46527348           
Submitter
HandleABI
Submitter SNP IDhCV277345
RefSNP(rs#)rs11820697
Submitted Batch IDxplore_hum_chr11_1_rev
Submitted DateJul 22, 2005
Publication CitedN.D.
First entry to dbSNPJul 22 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss46527348|allelePos=301|len=601|taxid=9606|alleles='G/T'|mol=Genomic
 TTTACATTTG CCCAAAACAA TGAAATTGAT TTTATACTGA TTTTACAGAT GAGACAATTG
 AGGCTAAAAG AGGTTAAAAG ACTCACAGCC ATTATGCAGC AGAGCCCATG TTTTCACTCA
 AGTCTGTCTG TATATAAAAG CTGTACTCTC TCTCCTTTGC CCTTTAGGAA GAAAGTAGTT
 GTTGGTTAAT ATGGGATGTG ATTGAGAATT TAGCGCTGCC ATCAAATTCC TTCATATCTG
 TCTTTGTCCT TTTTATTTTT GGATGCTCCA AATGGCTTCT TGCTCCACTC TACCAAAGAG
 K
 TTTCTTAGAT CCTTTAAAGA GGCTTTCTCT TAAGCTTAGG GATAGCAAAA GGTATTTCTT
 AAAATAACCA TTTAAGAGCA GCTATGGCTT ATGGGAGGCC TGTAAATTAT TGGGAAAAGA
 CTCCAATTTC TTGTAATATA GTGACACTTC TTTATCATCT GTTTGCCACT TGGGGAAGGG
 AGAGGTAGGA AAGGAGTTAG GTTCTGTGGT TGTGGTGGGG TTCTTGGCTG AGGCCTCCTT
 CCCCAGGCCT TGATTTCCAG GCAGAGACAC TGGCCCCTGT CTAGTGGCAG CTGCTAAGGA

  Submitted Frequency for ss46527348 back to top
There is no frequency submission for ss46527348.


  dbSNP summary of Genotypes for ss46527348 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-JPT8080G=0.97500002
T=0.02500000G/G=0.94999999
G/T=0.05000000
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282G=0.98780489
T=0.01219512G/G=0.97560978
G/T=0.02439024
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-CEU104104G=0.78846157
T=0.21153846G/G=0.67307693
G/T=0.23076923
T/T=0.09615385
Pr(chiSq=4.939,df=1)
=0.050
Genotype
Freq.
HapMap-YRI106106G=0.68867922
T=0.31132075G/G=0.50943398
G/T=0.35849056
T/T=0.13207547
Pr(chiSq=1.425,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss46527348 back to top
There is no individual genotype data for ss46527348.

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