Submitted SNP(ss) Details: ss44778511

Submitted SNP(ss) Details: ss44778511

Submitter
Handle	ABI
Submitter SNP ID	hCV1218289
RefSNP(rs#)	rs12698820
Submitted Batch ID	xplore_hum_chr7_1
Submitted Date	Jul 19, 2005
Publication Cited	N.D.
First entry to dbSNP	Jul 19 2005 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 4
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TAGATGACTA TGGAGACCCT CAGTGTTTTA GACTGAGATG ACTTGCCATT CCTACAAGAG
 ATCAATTGAA TGAATAATTG GGGCTGATTT TTCCCTAAGT ATTGCTTAGA ACATATACTG
 TTTTTTTTCT CCTCAAAAAT TGCCAGTTAT ATTGCCATAC TGGACAAAAT AAAACTGTTA
 GCTATATATC TATATCTATA CCTATATAAA TTTTAAAAAC GTAGCACAAA GTTTCTGCAC
 CATACTTTGT GAGCAGCTCT GTGTATTCCA AGGCTCAGAA AATCAGACTT TCAAAGCTAA
 R
 TTTTACCAAT ATATATCCCA TTGAAATTTG CATGAGCAAG CAGAAATAAT GTGGATGTTG
 GAGTTAGGTA AATGAATCAA ATCCTGGTTC AGCCACTTTC TAGGTATGTG ATTTTGGGCA
 AGATATTTAA TTTTTTTCAA CATAGTTTTT TTATTTTTAA AATGGAAAAG TTATGCACTG
 GCAGATTTGG AGGATGAAAT AATATGTTGG GAGACAGTGT GTTAAGTTAC TTCTCAAAAA
 GTTCTATTAT AATTATAGGT TGCTAATTTT TGGCATATTT TCATTTTAAA ACTTTTATTC

Submitted Frequency for ss44778511

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
AoD_Japanese - EAST ASIA	90	A=0.81000000	G=0.19000000	xplore_hum_chr7_1	ABI
AoD_Chinese - EAST ASIA	90	A=0.81000000	G=0.19000000	xplore_hum_chr7_1	ABI
AoD_African_American - NORTH AMERICA	90	A=0.77999997	G=0.22000000	xplore_hum_chr7_1	ABI
AoD_Caucasian - NORTH AMERICA	92	A=0.68000001	G=0.31999999	xplore_hum_chr7_1	ABI

dbSNP summary of Genotypes for ss44778511

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	224	224	A=0.73660713	G=0.26339287	A/A=0.53571427 A/G=0.40178570 G/G=0.06250000	Pr(chiSq=0.141,df=1) =0.752	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	A=0.83720928	G=0.16279070	A/A=0.69767439 A/G=0.27906978 G/G=0.02325581	Pr(chiSq=0.024,df=1) =1.000	Genotype Freq.
HapMap-JPT	172	172	A=0.80232561	G=0.19767442	A/A=0.63953489 A/G=0.32558140 G/G=0.03488372	Pr(chiSq=0.060,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	A=0.80973452	G=0.19026549	A/A=0.65486723 A/G=0.30973452 G/G=0.03539823	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	A=0.71428573	G=0.28571430	A/A=0.59183675 A/G=0.24489796 G/G=0.16326530	Pr(chiSq=7.840,df=1) =0.010	Genotype Freq.
HAPMAP-CHB	82	82	A=0.82926828	G=0.17073171	A/A=0.70731705 A/G=0.24390244 G/G=0.04878049	Pr(chiSq=0.788,df=1) =0.403	Genotype Freq.
HAPMAP-CHD	170	170	A=0.84117645	G=0.15882353	A/A=0.70588237 A/G=0.27058825 G/G=0.02352941	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	A=0.76704544	G=0.23295455	A/A=0.55681819 A/G=0.42045453 G/G=0.02272727	Pr(chiSq=2.742,df=1) =0.100	Genotype Freq.
HAPMAP-LWK	180	180	A=0.71666664	G=0.28333333	A/A=0.50000000 A/G=0.43333334 G/G=0.06666667	Pr(chiSq=0.404,df=1) =0.527	Genotype Freq.
HAPMAP-MEX	100	100	A=0.70999998	G=0.28999999	A/A=0.50000000 A/G=0.41999999 G/G=0.08000000	Pr(chiSq=0.020,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	A=0.65034968	G=0.34965035	A/G=0.47552449 A/A=0.41258740 G/G=0.11188811	Pr(chiSq=0.297,df=1) =0.655	Genotype Freq.
HAPMAP-TSI	176	176	A=0.78409094	G=0.21590909	A/A=0.60227275 A/G=0.36363637 G/G=0.03409091	Pr(chiSq=0.482,df=1) =0.527	Genotype Freq.

Submitted individual genotype for ss44778511

There is no individual genotype data for ss44778511.

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