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Submitted SNP(ss) Details: ss43567188           
Submitter
HandleABI
Submitter SNP IDhCV2815221
RefSNP(rs#)rs12435208
Submitted Batch IDxplore_hum_chr14_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43567188|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TTCAAACATT TTTAGGTGTT AGAAATTCTA TACATTTTGA GATTTTTTTT TCTATTTATA
 GACAGTGATT AAACCCATTG TTTTGTTATT TTTCCAGTCT GTTAGAGACT TTTGACTAAC
 CTGTGTGTGT GTATGTGTTT GCAAATACAT ACATTTGTGT TTGTGAACAA AGCATTAATT
 TAAAAGAGGT TTGTCTCTAA GAATGACTCT ATTGATCTAT TCCAAATGCA AATAAACTTT
 TAGCATGATT GAAAGTCGTA TTGAGTCTCC AGGAGGAACA ATGGCTACTT ACAGAAGCAA
 Y
 GGTTGCTTGT ATAAGGAACA ATGGTTGCTT CTATAAGAAG GGGCACTGTG AGGGAAACTT
 TCTCCTATAA ACCCATTTAT CTATCTTTAA TTGCACATGT TATCTTCTCC AATAATTAAA
 AACAAAAAAT GCATTGTCAG TAACAATAAT CCCAAATAAT CATTTTTCCA TACTACTACT
 ACCTGTTAGT GGTGCTATAT ATATAGCTTA TATTACTATC TACATACAAA TACGTCATTT
 CAGTGTGTTC TGGCAGTAGC CAGGTAGGTG TTTGAGCGTT GTGTTGACAG TCTAACCATT

  Submitted Frequency for ss43567188 back to top
There is no frequency submission for ss43567188.


  dbSNP summary of Genotypes for ss43567188 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8888T=0.60227275
C=0.39772728C/T=0.47727272
T/T=0.36363637
C/C=0.15909091
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8888C=0.57954544
T=0.42045453C/T=0.61363637
C/C=0.27272728
T/T=0.11363637
Pr(chiSq=2.955,df=1)
=0.100
Genotype
Freq.
HapMap-YRI116116C=0.68103451
T=0.31896552C/C=0.46551725
C/T=0.43103448
T/T=0.10344828
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-CEU120120C=0.51666665
T=0.48333332C/T=0.46666667
C/C=0.28333333
T/T=0.25000000
Pr(chiSq=0.258,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss43567188 back to top
There is no individual genotype data for ss43567188.

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