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Submitted SNP(ss) Details: ss43567125           
Submitter
HandleABI
Submitter SNP IDhCV435693
RefSNP(rs#)rs10872941
Submitted Batch IDxplore_hum_chr14_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43567125|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TAAACTGATA ATCTAAAAAT TATCCAAGTT TCCTTTTCAA AAGCAAATAA CCTAATGCCT
 TCAGTTTTAA AGCTCTTTAA TTTTAAATTT TAAAGCTCTT CTAAGTCAGG GAAATAATCT
 TCATTTTCAA TGAGCAGTAG TAACACTGTT AATAGAGCCT TCAGAATAAA TTTTCCTTTA
 ATATATCATG CCAATTTCAT TTTTAAAAAT TTACAAAGCT TGGTAGCAAG CTTTGTTCAT
 AAATGTCTGG AAAAAATATG TCCACCTAAA CATTGTTGGT ATTGTATAAA TGGCTACATT
 Y
 TCAATAAAGA GTAAGATGGA TATAACTAAT AAAAAATTAA GTGCACATAC AGCATAGCAG
 ACATATAGTT AGTTGTTTAA TGTTAGTAAA TTATTACAGA GTTAGTTATG TGTAAGAGTA
 TTTTTCATTT GGTTTAAAAT TTTAGAGGTT TAATAACTGA AATTTGTCAG AGACTCTAAA
 AGTGATGAGA TTCTTGTAAT TGAAACATAT TAGGAAATTT GTTAAAAAGT CAATGCATAA
 ACTAGAATGT CTCCTTAATA TTATTTAATA GAATAAGTAA ACACATTTAC TGGTATTAGA

  Submitted Frequency for ss43567125 back to top
There is no frequency submission for ss43567125.


  dbSNP summary of Genotypes for ss43567125 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU110110C=0.89090908
T=0.10909091C/C=0.78181821
C/T=0.21818182
Pr(chiSq=0.170,df=1)
=0.752		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		7878C=0.67948717
T=0.32051283C/C=0.53846157
C/T=0.28205130
T/T=0.17948718
Pr(chiSq=4.845,df=1)
=0.050		Genotype
Freq.
HapMap-JPT7676C=0.81578946
T=0.18421052C/C=0.68421054
C/T=0.26315790
T/T=0.05263158
Pr(chiSq=0.588,df=1)
=0.479		Genotype
Freq.

  Submitted individual genotype for ss43567125 back to top
There is no individual genotype data for ss43567125.

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