Submitted SNP(ss) Details: ss28532810

Submitted SNP(ss) Details: ss28532810

Submitter
Handle	ABI
Submitter SNP ID	hCV1778067
RefSNP(rs#)	rs17423910
Submitted Batch ID	xplore_hum_chr1_1
Submitted Date	Jul 18, 2005
Publication Cited	N.D.
First entry to dbSNP	Nov 10 2004 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 2
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTTTCTTTCT TTCCTGAAAC ACATTTTAGA GGCACAAATA AATGAATACA TAAATAATAT
 AGTTTCAGGT AGTGATGCAT GTGGTGAAGA AAAATGCACA GGAAAACGAG ATAGAGAAGG
 ATGGCTAGTG TCATGTCAGA TAAGATTCTC AGACAGAACA CCCTCAAGGA GGTGATGTCT
 GAACTCCCTG CCCACCACAA CAAACAGCCT ACAGGACCTT AAGGAAAAGG CTGTATTTAG
 GTTGATTACT CAGTTTCCCT GAGAGGCCAT CAGAACTAGC TCCAACTTGC TTCATATTCA
 R
 TTTTCCCTCA GTTATCCTCA GTAGTCCAAG CCTCCCATAA TCATTTTAGT ATTTTGCTCC
 ATAAGGCTTG ACACATTTCC TAAGATAAAT GAATCTTCCC TAACCTTTCC ACAGTGCTGC
 TGAAATTCTG AATCTGGAAA TCATGGAGAT TTCCTCCATC CCTAGACTCC TAGCTGATTG
 TTCCCTTTCC TTGCTCCAAC TGACACCTGG CTCTCCCTTG GCCTCTGAGC TACACTTGCA
 GTGTTCTTTT TTCATTCCCC CCCAGCCCCA CATTCAATGC ACTGCAGTGC ATAGAGAAAG

Submitted Frequency for ss28532810

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AoD_African_American - NORTH AMERICA	90	A=0.93000001	G=0.07000000				xplore_hum_chr1_1	ABI
AoD_Caucasian - NORTH AMERICA	92	A=0.68000001	G=0.31999999				xplore_hum_chr1_1	ABI

dbSNP summary of Genotypes for ss28532810

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HAPMAP-CHB	82	82	A=0.85365856	G=0.14634146	A/A=0.70731705 A/G=0.29268292	Pr(chiSq=0.327,df=1) =0.584	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	A=0.83720928	G=0.16279070	A/A=0.69767439 A/G=0.27906978 G/G=0.02325581	Pr(chiSq=0.024,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	A=0.83673471	G=0.16326530	A/A=0.69387758 A/G=0.28571430 G/G=0.02040816	Pr(chiSq=0.102,df=1) =0.752	Genotype Freq.
HAPMAP-MEX	100	100	A=0.82999998	G=0.17000000	A/A=0.68000001 A/G=0.30000001 G/G=0.02000000	Pr(chiSq=0.199,df=1) =0.752	Genotype Freq.
HAPMAP-CHD	170	170	A=0.83529413	G=0.16470589	A/A=0.68235296 A/G=0.30588236 G/G=0.01176471	Pr(chiSq=1.060,df=1) =0.317	Genotype Freq.
HapMap-JPT	172	172	A=0.94186044	G=0.05813954	A/A=0.88372093 A/G=0.11627907	Pr(chiSq=0.037,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	A=0.80681819	G=0.19318181	A/A=0.65909094 A/G=0.29545453 G/G=0.04545455	Pr(chiSq=0.240,df=1) =0.655	Genotype Freq.
HAPMAP-TSI	176	176	A=0.75000000	G=0.25000000	A/A=0.52272725 A/G=0.45454547 G/G=0.02272727	Pr(chiSq=3.960,df=1) =0.050	Genotype Freq.
HAPMAP-LWK	180	180	A=0.93888891	G=0.06111111	A/A=0.88888890 A/G=0.10000000 G/G=0.01111111	Pr(chiSq=1.488,df=1) =0.251	Genotype Freq.
HapMap-CEU	226	226	A=0.80973452	G=0.19026549	A/A=0.65486723 A/G=0.30973452 G/G=0.03539823	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	A=0.93362832	G=0.06637168	A/A=0.87610620 A/G=0.11504425 G/G=0.00884956	Pr(chiSq=0.581,df=1) =0.479	Genotype Freq.
HAPMAP-MKK	286	286	A=0.89160842	G=0.10839161	A/A=0.79020977 A/G=0.20279720 G/G=0.00699301	Pr(chiSq=0.346,df=1) =0.584	Genotype Freq.

Submitted individual genotype for ss28532810

There is no individual genotype data for ss28532810.

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