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Submitted SNP(ss) Details: ss165980872           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr1_555993
RefSNP(rs#)rs1832730
Submitted Batch IDNA20431_snpassay_chr1
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss165980872|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CCTTAACCTC TACTTCTACC TGCGCCTAAT CTACTCCACC TCAATCACAC TACTCCCTAT
 ATCTAACAAC GTAAAAATAA AATGACAGTT TGAACACACA AAACCCACCC CATTCCTCCC
 CACACTCATC GCCCTTACCA CACTGCTCCT ACCTATCTCC CCTTTTATGC TAATAATCTT
 ATAGAAATTT AGGTTAAATA CAGACCAAGA GCCTTCAAAG CCCTCAGTAA GTTGCAATAC
 TTAATTTCTG
 Y
 AACAGCTAAG GACTGCAAAA CCCCACTCTG CATCAACTGA ACGCAAATCA GCCACTTTAA
 TTAAGCTAAG CCCTTACTAG ACCAATGGGA CTTAAACCCA CAAACACTTA GTTAACAGCT
 AAGCACCCTA ATCAACTGGC TTCAATCTAC TTCTCCCGCC GCCGGGAAAA AAGGCGGGAG
 AAGCCCCGGC AGGTTTGAAG CTGCTTCTTC GAATTTGCAA TTCAATATGA AAATCACCTC
 AGAGCTGGTA

  Submitted Frequency for ss165980872 back to top
There is no frequency submission for ss165980872.


  dbSNP summary of Genotypes for ss165980872 back to top
No sufficient data to compute Hardy-weinberg probability for ss165980872.


  Submitted individual genotype for ss165980872 back to top
There is no individual genotype data for ss165980872.

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