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Submitted SNP(ss) Details: ss165980870           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA20431_36_chr1_555839
RefSNP(rs#)rs9283151
Submitted Batch IDNA20431_snpassay_chr1
Submitted DateSep 30, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 30 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss165980870|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AGCTAACATG ACTAACACCC TTAATTCCAT CCACCCTCCT CTCCCTAGGA GGCCTGCCCC
 CGCTAACCGG CTTTTTGCCC AAATGGGCCA TTATCGAAGA ATTCACAAAA AACAATAGCC
 TCATCATCCC CACCATCATA GCCATCATCA CCCTCCTTAA CCTCTACTTC TACCTGCGCC
 TAATCTACTC CACCTCAATC ACACTACTCC CTATATCTAA CAACGTAAAA ATAAAATGAC
 AGTTTGAACA
 Y
 ACAAAACCCA CCCCATTCCT CCCCACACTC ATCGCCCTTA CCACACTGCT CCTACCTATC
 TCCCCTTTTA TGCTAATAAT CTTATAGAAA TTTAGGTTAA ATACAGACCA AGAGCCTTCA
 AAGCCCTCAG TAAGTTGCAA TACTTAATTT CTGCAACAGC TAAGGACTGC AAAACCCCAC
 TCTGCATCAA CTGAACGCAA ATCAGCCACT TTAATTAAGC TAAGCCCTTA CTAGACCAAT
 GGGACTTAAA

  Submitted Frequency for ss165980870 back to top
There is no frequency submission for ss165980870.


  dbSNP summary of Genotypes for ss165980870 back to top
No sufficient data to compute Hardy-weinberg probability for ss165980870.


  Submitted individual genotype for ss165980870 back to top
There is no individual genotype data for ss165980870.

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