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Submitted SNP(ss) Details: ss162980610           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_555327
RefSNP(rs#)rs6594030
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162980610|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CGCATCCATA ATCCTTCTAA TAGCTATCCT CTTCAACAAT ATACTCTCCG GACAATGAAC
 CATAACCAAT ACCACCAATC AATACTCATC ATTAATAATC ATAATGGCTA TAGCAATAAA
 ACTAGGAATA GCCCCCTTTC ACTTCTGAGT CCCAGAGGTT ACCCAAGGCA CCCCTCTGAC
 ATCCGGCCTG CTCCTTCTCA CATGACAAAA ACTAGCCCCC ATCTCAATCA TATACCAAAT
 TTCTCCCTCA
 Y
 TAAACGTAAG CCTTCTCCTC ACTCTTTCAA TCTTATCCAT CATGGCAGGC AGTTGAGGTG
 GATTAAACCA AACCCAACTA CGCAAAATCT TAGCATACTC CTCAATTACC CACATAGGAT
 GAATAACAGC AGTTCTACCG TACAACCCTA ACATAACCAT TCTTAATTTA ACTATTTATA
 TTATCCTAAC TACTACCGCA TTCCTACTAC TCAACTTAAA CTCCAGCACC ACAACCCTAC
 TACTATCTCG

  Submitted Frequency for ss162980610 back to top
There is no frequency submission for ss162980610.


  dbSNP summary of Genotypes for ss162980610 back to top
No sufficient data to compute Hardy-weinberg probability for ss162980610.


  Submitted individual genotype for ss162980610 back to top
There is no individual genotype data for ss162980610.

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