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Submitted SNP(ss) Details: ss162980602           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_555149
RefSNP(rs#)rs1578391
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162980602|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AACCCGTCAT CTACTCTACC ATCTTTGCAG GCACACTCAT CACAGCGCTA AGCTCGCACT
 GATTTTTTAC CTGAGTAGGC CTAGAAATAA ACATGCTAGC TTTTATTCCA GTTCTAACCA
 AAAAAATAAA CCCTCGTTCC ACAGAAGCTG CCATCAAGTA TTTCCTCACG CAAGCAACCG
 CATCCATAAT CCTTCTAATA GCTATCCTCT TCAACAATAT ACTCTCCGGA CAATGAACCA
 TAACCAATAC
 Y
 ACCAATCAAT ACTCATCATT AATAATCATA ATGGCTATAG CAATAAAACT AGGAATAGCC
 CCCTTTCACT TCTGAGTCCC AGAGGTTACC CAAGGCACCC CTCTGACATC CGGCCTGCTC
 CTTCTCACAT GACAAAAACT AGCCCCCATC TCAATCATAT ACCAAATTTC TCCCTCATTA
 AACGTAAGCC TTCTCCTCAC TCTTTCAATC TTATCCATCA TGGCAGGCAG TTGAGGTGGA
 TTAAACCAAA

  Submitted Frequency for ss162980602 back to top
There is no frequency submission for ss162980602.


  dbSNP summary of Genotypes for ss162980602 back to top
No sufficient data to compute Hardy-weinberg probability for ss162980602.


  Submitted individual genotype for ss162980602 back to top
There is no individual genotype data for ss162980602.

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