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Submitted SNP(ss) Details: ss162980541           
Submitter
HandleCOMPLETE_GENOMICS
Submitter SNP IDNA19240_36_chr1_45408
RefSNP(rs#)rs28396308
Submitted Batch IDNA19240_snpassay_chr1
Submitted DateSep 29, 2009
Publication Cited[1] Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays
First entry to dbSNPSep 29 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCOMPLETE GENOMICS SEQUENCING
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss162980541|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 TATGCGACCT TCCCACTTAA AATCCTACTA TTTACGCTTC AGTAAAAGAA AAAAAATTTT
 TAATCTAAGT ATGTAATTCT TTTGCTGAAG ACACTTCACT TGCTTCTGTG CCCTTAAACT
 GGTATGTTAT CATGGTATAG TAGGCCATCC AAGACCTGGC TTCCTTCCTT TTTTTCAGTC
 TCAGAGAATA ACATACTCTT TCCCTGCAAC TCCAGATCCA ATTTGGTTTT CTTTTACTTG
 CCTGGAAACT
 Y
 CAAAATCTAT CAACTCTGGG GCTTTCCACT AGCTAATCAT TTTGTATACA ATATTTGTCC
 TTCATGTTTT GCCTCTTAAC ATCTCAGCTT TCAGTTTCAT CATTTTACCA GGGAGGCCTC
 CCAGAACCTG AGTCCAGAAG AGTTCCTTCC ATTGTATATT CCTCTAGCAC TACCTATTAC
 CTCTTTTGTA AGACTAACAG CCCTCAAAAT TTTTCATTCA GTGATGTCTT CCTCATTGCA
 TTTTAAGTTC

  Submitted Frequency for ss162980541 back to top
There is no frequency submission for ss162980541.


  dbSNP summary of Genotypes for ss162980541 back to top
No sufficient data to compute Hardy-weinberg probability for ss162980541.


  Submitted individual genotype for ss162980541 back to top
There is no individual genotype data for ss162980541.

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