U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    pbxip1a pre-B-cell leukemia homeobox interacting protein 1a [ Danio rerio (zebrafish) ]

    Gene ID: 563463, updated on 27-Dec-2024

    Summary

    Official Symbol
    pbxip1aprovided by ZNC
    Official Full Name
    pre-B-cell leukemia homeobox interacting protein 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-871
    See related
    Ensembl:ENSDARG00000071015 AllianceGenome:ZFIN:ZDB-GENE-060503-871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    id:ibd5036; si:ch211-210h11.11
    Summary
    Is expressed in mesoderm and somite. Orthologous to human PBXIP1 (PBX homeobox interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See pbxip1a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7549840..7567236)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7630648..7648308)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene uncharacterized LOC137488468 Neighboring gene limb and CNS expressed 1 like Neighboring gene S100 calcium binding protein A11 Neighboring gene S100 calcium binding protein U

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    pre-B-cell leukemia transcription factor interacting protein 1-like; pre-B-cell leukemia transcription factor-interacting protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      7549840..7567236
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159476.5XP_005159533.1  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005159533.1

      UniProtKB/TrEMBL
      A0A8M2B630
      Conserved Domains (2) summary
      pfam15960
      Location:433561
      DUF4763; Domain of unknown function (DUF4763)
      cl11531
      Location:387463
      DUF904; Protein of unknown function (DUF904)
    2. XM_686823.10XP_691915.5  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8N7UVA5
      Related
      ENSDARP00000115416.1, ENSDART00000138866.3
      Conserved Domains (2) summary
      pfam15960
      Location:425553
      DUF4763; Domain of unknown function (DUF4763)
      cl11531
      Location:379455
      DUF904; Protein of unknown function (DUF904)
    3. XM_005159477.5XP_005159534.1  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B628, F1RDW1
      Related
      ENSDARP00000099035.2, ENSDART00000115058.4
      Conserved Domains (2) summary
      pfam15960
      Location:427555
      DUF4763; Domain of unknown function (DUF4763)
      cl11531
      Location:381457
      DUF904; Protein of unknown function (DUF904)
    4. XM_068215234.1XP_068071335.1  pre-B-cell leukemia transcription factor-interacting protein 1 isoform X4

    Loading
    External link. Please review our privacy policy.