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SOBER1 carboxylesterase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828325, updated on 18-Sep-2024

Summary

Official Symbol
SOBER1
Official Full Name
carboxylesterase
Primary source
TAIR:AT4G22300
Locus tag
AT4G22300
See related
Araport:AT4G22300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1; T10I14.130; T10I14_130
Summary
encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis
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Genomic context

See SOBER1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (11787299..11789312, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ubiquitin C-terminal hydrolases superfamily protein Neighboring gene Ubiquitin-specific protease family C19-related protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Uncharacterized protein family (UPF0041) Neighboring gene golgin family A protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_118356.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  
located_in plasma membrane PubMed 

General protein information

Preferred Names
carboxylesterase
NP_193961.3
  • SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1 (SOBER1); FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: defense response, incompatible interaction, regulation of plant-type hypersensitive response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G22305.1); Has 4896 Blast hits to 2727 proteins in 833 species: Archae - 28; Bacteria - 2331; Metazoa - 701; Fungi - 503; Plants - 344; Viruses - 0; Other Eukaryotes - 989 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11787299..11789312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118356.4NP_193961.3  carboxylesterase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193961.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4KWB1, Q8GYK2
    UniProtKB/TrEMBL
    A0A178V3R8
    Conserved Domains (2) summary
    COG0596
    Location:51180
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    cl21494
    Location:51252
    Abhydrolase; alpha/beta hydrolases
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