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F-box and associated interaction domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841816, updated on 18-Sep-2024

Summary

Official Full Name
F-box and associated interaction domains-containing protein
Primary source
TAIR:AT1G53790
Locus tag
AT1G53790
See related
Araport:AT1G53790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18A20.3; T18A20_3
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Genomic context

Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (20079081..20081464, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase family protein Neighboring gene 26S proteasome regulatory complex ATPase Neighboring gene muscle M-line assembly protein Neighboring gene ncRNA Neighboring gene pseudo

Interactions

General gene information

NM_001124013.2
NM_001333609.1
NM_104256.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus  

General protein information

Preferred Names
F-box and associated interaction domains-containing protein
NP_001117485.1
  • F-box and associated interaction domains-containing protein; FUNCTIONS IN: endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, alpha-subunit complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_175782.2
  • F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G31470.1); Has 1824 Blast hits to 1754 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 137; Plants - 1479; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    20079081..20081464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001124013.2NP_001117485.1  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117485.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EIR6, A0A7G2E0M8, B3H7F2
    Conserved Domains (3) summary
    TIGR01640
    Location:181413
    F_box_assoc_1; F-box protein interaction domain
    pfam00646
    Location:82121
    F-box; F-box domain
    cl00467
    Location:447461
    Ntn_hydrolase; The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a ...
  2. NM_104256.4NP_175782.2  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175782.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WQM8, Q9SSB3
    UniProtKB/TrEMBL
    A0A178WC20, A0A654EIR6
    Conserved Domains (2) summary
    TIGR01640
    Location:181413
    F_box_assoc_1; F-box protein interaction domain
    pfam00646
    Location:82121
    F-box; F-box domain
  3. NM_001333609.1NP_001322774.1  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EIR6, A0A7G2E0M8, B3H7F2
    Conserved Domains (3) summary
    TIGR01640
    Location:181413
    F_box_assoc_1; F-box protein interaction domain
    pfam00646
    Location:82121
    F-box; F-box domain
    cl00467
    Location:447461
    Ntn_hydrolase; The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a ...
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