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    Nucleoporin autopeptidase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842256, updated on 18-Sep-2024

    Summary

    Official Full Name
    Nucleoporin autopeptidase
    Primary source
    TAIR:AT1G59660
    Locus tag
    AT1G59660
    See related
    Araport:AT1G59660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T30E16.24; T30E16_24
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    Genomic context

    Location:
    chromosome: 1
    Exon count:
    14
    Sequence:
    Chromosome: 1; NC_003070.9 (21923986..21929437)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transcription factor BIG PETAL P (BPE) Neighboring gene CW14 protein (DUF1336) Neighboring gene glutathione S-transferase TAU 15 Neighboring gene F-box family protein

    Interactions

    General gene information

    NM_104659.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nuclear envelope PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    Nucleoporin autopeptidase
    NP_176175.1
    • Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 64429 Blast hits to 28580 proteins in 1811 species: Archae - 118; Bacteria - 17184; Metazoa - 18465; Fungi - 12106; Plants - 2886; Viruses - 648; Other Eukaryotes - 13022 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21923986..21929437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333860.1NP_001320545.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN64, A0A5S9WQZ0
    2. NM_001333861.1NP_001320546.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AN64, A0A5S9WQZ0
    3. NM_104659.3NP_176175.1  Nucleoporin autopeptidase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176175.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4ID16, Q9LQ50
      UniProtKB/TrEMBL
      A0A5S9WQZ0
      Conserved Domains (2) summary
      pfam04096
      Location:846986
      Nucleoporin2; Nucleoporin autopeptidase
      pfam13634
      Location:46143
      Nucleoporin_FG; Nucleoporin FG repeat region
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