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Zinc finger C-x8-C-x5-C-x3-H type family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843870, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc finger C-x8-C-x5-C-x3-H type family protein
Primary source
TAIR:AT1G75340
Locus tag
AT1G75340
See related
Araport:AT1G75340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1B16.12; F1B16_12
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Sequence:
Chromosome: 1; NC_003070.9 (28268968..28272081, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene NmrA-like negative transcriptional regulator family protein Neighboring gene auxin-like 1 protein Neighboring gene nucleolar-like protein Neighboring gene ornithine carbamoyltransferase Neighboring gene Ribosomal protein L31 Neighboring gene uncharacterized protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene bifunctional nuclease in basal defense response 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001198472.1
NM_001334683.1
NM_106188.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zinc finger C-x8-C-x5-C-x3-H type family protein
NP_001185401.1
  • Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571).
NP_565108.2
  • Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 7050 Blast hits to 2615 proteins in 330 species: Archae - 4; Bacteria - 260; Metazoa - 1495; Fungi - 1019; Plants - 181; Viruses - 41; Other Eukaryotes - 4050 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    28268968..28272081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198472.1 → NP_001185401.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185401.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EQQ0
    Conserved Domains (1) summary
    pfam00642
    Location:2 → 46
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. NM_106188.3 → NP_565108.2  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565108.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HZ22, Q94C30, Q9FWS3
    UniProtKB/TrEMBL
    A0A5S9WUK5
    Conserved Domains (1) summary
    smart00356
    Location:2 → 25
    ZnF_C3H1; zinc finger

  3. NM_001334683.1 → NP_001322472.1  Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU48, A0A654EQQ0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FWS3.2

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