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    med31 mediator complex subunit 31 [ Danio rerio (zebrafish) ]

    Gene ID: 436690, updated on 9-Dec-2024

    Summary

    Official Symbol
    med31provided by ZNC
    Official Full Name
    mediator complex subunit 31provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-114
    See related
    Ensembl:ENSDARG00000008020 AllianceGenome:ZFIN:ZDB-GENE-040718-114
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa04d01; zgc:92673; wu:fa04d01
    Summary
    Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED31 (mediator complex subunit 31). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See med31 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (40045234..40049649, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (40021681..40026096, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 47 member 2, tandem duplicate 1 Neighboring gene solute carrier family 47 member 2, tandem duplicate 2 Neighboring gene solute carrier family 13 member 5a Neighboring gene serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    part_of core mediator complex  
    part_of mediator complex  
    part_of mediator complex  
    located_in nucleus  

    General protein information

    Preferred Names
    mediator of RNA polymerase II transcription subunit 31
    Names
    mediator complex subunit soh1
    mediator of RNA polymerase II transcription, subunit 31 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002417.2NP_001002417.2  mediator of RNA polymerase II transcription subunit 31

      See identical proteins and their annotated locations for NP_001002417.2

      Status: VALIDATED

      Source sequence(s)
      EH553004, EH600668
      UniProtKB/Swiss-Prot
      Q6DH26
      Related
      ENSDARP00000104686.2, ENSDART00000124416.3
      Conserved Domains (1) summary
      pfam05669
      Location:12105
      Med31; SOH1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      40045234..40049649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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