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RPT2 Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817601, updated on 18-Sep-2024

Summary

Official Symbol
RPT2
Official Full Name
Phototropic-responsive NPH3 family protein
Primary source
TAIR:AT2G30520
Locus tag
AT2G30520
See related
Araport:AT2G30520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT2G30510; ROOT PHOTOTROPISM 2; T6B20.13; T6B20_13
Summary
light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis
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Genomic context

See RPT2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (13002686..13005746, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cinnamate-4-hydroxylase Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene zinc finger CCCH domain protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_001036369.2
NM_001084513.2
NM_179816.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm PubMed 
located_in nucleus PubMed 
located_in nucleus  
located_in nucleus PubMed 
located_in peroxisome PubMed 

General protein information

Preferred Names
Phototropic-responsive NPH3 family protein
NP_001031446.1
  • ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001077982.1
  • ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 865 Blast hits to 833 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 860; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_850147.1
  • ROOT PHOTOTROPISM 2 (RPT2); FUNCTIONS IN: signal transducer activity; INVOLVED IN: phototropism; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G67385.1); Has 1044 Blast hits to 1009 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 0; Plants - 865; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13002686..13005746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084513.2NP_001077982.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077982.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSU7, F4INU4
    Conserved Domains (3) summary
    smart00225
    Location:280
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam03000
    Location:139396
    NPH3; NPH3 family
    cl02518
    Location:269
    BTB; BTB/POZ domain
  2. NM_179816.3NP_850147.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850147.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04343, O04344, Q0WKX4, Q682S0, Q93VA6, Q9M6N8
    UniProtKB/TrEMBL
    A0A5S9X2Q2, A0A7G2EA85, Q0WL22, Q0WLR7
    Conserved Domains (2) summary
    cl38908
    Location:24127
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam03000
    Location:187444
    NPH3; NPH3 family
  3. NM_001036369.2NP_001031446.1  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031446.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSU7, F4INU4
    Conserved Domains (3) summary
    smart00225
    Location:280
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam03000
    Location:139396
    NPH3; NPH3 family
    cl02518
    Location:269
    BTB; BTB/POZ domain
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