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VPS2.1 SNF7 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815211, updated on 18-Sep-2024

Summary

Official Symbol
VPS2.1
Official Full Name
SNF7 family protein
Primary source
TAIR:AT2G06530
Locus tag
AT2G06530
See related
Araport:AT2G06530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T12H3.8; T12H3_8; VPS2
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Genomic context

See VPS2.1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (2588523..2590531, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene replication protein A 1A Neighboring gene photosystem II subunit X Neighboring gene pseudo Neighboring gene TTF-type zinc finger protein with HAT dimerization domain-containing protein

Bibliography

Interactions

General gene information

NM_001335305.1
NM_126650.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
part_of ESCRT III complex PubMed 
located_in endosome membrane PubMed 
located_in late endosome PubMed 
located_in mitochondrion PubMed 
located_in multivesicular body PubMed 

General protein information

Preferred Names
SNF7 family protein
NP_565336.1
  • VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    2588523..2590531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126650.4NP_565336.1  SNF7 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565336.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q701A4, Q701B3, Q701B7, Q701C5, Q701E0, Q701E1, Q701E3, Q701F9, Q701G8, Q701J8, Q8L915, Q9SKI2
    UniProtKB/TrEMBL
    A0A178VT12, A0A5S9WXS7
    Conserved Domains (1) summary
    pfam03357
    Location:18187
    Snf7
  2. NM_001335305.1NP_001324346.1  SNF7 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZU4
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