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VPS24.1 SNF7 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832359, updated on 18-Sep-2024

Summary

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Official Symbol
VPS24.1
Official Full Name
SNF7 family protein
Primary source
TAIR:AT5G22950
Locus tag
AT5G22950
See related
Araport:AT5G22950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MRN17.18; MRN17_18; VPS24
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Genomic context

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See VPS24.1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (7681234..7682949)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene enabled-like protein (DUF1635) Neighboring gene glucuronoxylan glucuronosyltransferase, putative Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization. Katsiarimpa A, et al. Plant Cell, 2011 Aug. PMID 21810997, Free PMC Article
  2. The Arabidopsis Endosomal Sorting Complex Required for Transport III Regulates Internal Vesicle Formation of the Prevacuolar Compartment and Is Required for Plant Development. Cai Y, et al. Plant Physiol, 2014 Jul. PMID 24812106, Free PMC Article
  3. The AAA-type ATPase AtSKD1 contributes to vacuolar maintenance of Arabidopsis thaliana. Shahriari M, et al. Plant J, 2010 Oct. PMID 20663085
  4. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
  5. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_122201.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within intralumenal vesicle formation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT III complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in late endosome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SNF7 family protein
NP_197686.1
  • VPS24.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7681234..7682949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122201.2 → NP_197686.1  SNF7 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197686.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56ZX9, Q8H7C1, Q9FFB3
    UniProtKB/TrEMBL
    A0A178UMV9, A0A5S9Y6D9
    Conserved Domains (1) summary
    cl21588
    Location:20 → 153
    Snf7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FFB3.1

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