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    PUB23 plant U-box 23 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818166, updated on 18-Sep-2024

    Summary

    Official Symbol
    PUB23
    Official Full Name
    plant U-box 23
    Primary source
    TAIR:AT2G35930
    Locus tag
    AT2G35930
    See related
    Araport:AT2G35930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPUB23; F11F19.16; F11F19_16; plant U-box 23
    Summary
    Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity.
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    Genomic context

    See PUB23 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (15082855..15084559, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene RNA helicase family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene BEL1-like homeodomain 1 Neighboring gene embryo sac development arrest 12

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    General gene information

    NM_129152.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm  
    located_in cytosol PubMed 

    General protein information

    Preferred Names
    plant U-box 23
    NP_181137.2
    • plant U-box 23 (PUB23); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 22 (TAIR:AT3G52450.1); Has 2501 Blast hits to 2466 proteins in 187 species: Archae - 0; Bacteria - 34; Metazoa - 243; Fungi - 89; Plants - 1910; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15082855..15084559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129152.3NP_181137.2  plant U-box 23 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181137.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84TG3, Q9SJ57
      UniProtKB/TrEMBL
      A0A178VST6, A0A5S9X4B4, A0A654F0N2
      Conserved Domains (1) summary
      smart00504
      Location:1679
      Ubox; Modified RING finger domain
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