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hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817820, updated on 18-Sep-2024

Summary

Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT2G32600
Locus tag
AT2G32600
See related
Araport:AT2G32600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T26B15.16; T26B15_16
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Genomic context

Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (13833545..13835758, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene transmembrane protein, putative (DUF1068) Neighboring gene condensin complex subunit Neighboring gene cellulose synthase-like B1 Neighboring gene cellulose synthase-like B

Interactions

General gene information

NM_128819.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleic acid binding  
enables zinc ion binding  
Component Evidence Code Pubs
located_in nucleus  

General protein information

Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_565747.1
  • hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, intracellular, spliceosomal complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 18078 Blast hits to 8181 proteins in 576 species: Archae - 26; Bacteria - 1885; Metazoa - 7255; Fungi - 1800; Plants - 3678; Viruses - 906; Other Eukaryotes - 2528 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13833545..13835758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128819.4NP_565747.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565747.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VXZ1, A0A654EZN1, O80897, Q940T1
    Conserved Domains (1) summary
    COG5246
    Location:6216
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
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