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SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838026, updated on 18-Sep-2024

Summary

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Official Full Name
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Primary source
TAIR:AT1G14640
Locus tag
AT1G14640
See related
Araport:AT1G14640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5E21.18; T5E21_18
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (5023426..5025955)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene decoy Neighboring gene XRI1-like protein Neighboring gene uncharacterized protein Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001332130.1
NM_101331.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
NP_001319004.1
  • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; EXPRESSED IN: male gametophyte, flower, seed, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), Pre-mRNA splicing factor PRP21 like protein (InterPro:IPR022030); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (TAIR:AT1G14650.2); Has 30145 Blast hits to 19260 proteins in 1053 species: Archae - 38; Bacteria - 3368; Metazoa - 12891; Fungi - 4189; Plants - 5021; Viruses - 726; Other Eukaryotes - 3912 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5023426..5025955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332130.1 → NP_001319004.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMB6, A0A384LD26, A0A5S9UF98, F4HW92
    Conserved Domains (4) summary
    smart00648
    Location:182 → 235
    SWAP; Suppressor-of-White-APricot splicing regulator
    pfam03154
    Location:523 → 634
    Atrophin-1; Atrophin-1 family
    pfam12230
    Location:250 → 460
    PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
    cl28922
    Location:689 → 735
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. NM_101331.2 → NP_172916.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172916.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMB6, A0A384LD26, A0A5S9UF98, F4HW92
    Conserved Domains (4) summary
    smart00648
    Location:182 → 235
    SWAP; Suppressor-of-White-APricot splicing regulator
    pfam03154
    Location:523 → 634
    Atrophin-1; Atrophin-1 family
    pfam12230
    Location:250 → 460
    PRP21_like_P; Pre-mRNA splicing factor PRP21 like protein
    cl28922
    Location:689 → 735
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
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