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RGTA1 RAB geranylgeranyl transferase alpha subunit 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828551, updated on 18-Sep-2024

Summary

Official Symbol
RGTA1
Official Full Name
RAB geranylgeranyl transferase alpha subunit 1
Primary source
TAIR:AT4G24490
Locus tag
AT4G24490
See related
Araport:AT4G24490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRGTA1; RAB geranylgeranyl transferase alpha subunit 1
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Genomic context

See RGTA1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (12655059..12658348, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CRT (chloroquine-resistance transporter)-like transporter 2 Neighboring gene GATA-type zinc finger protein with TIFY domain-containing protein Neighboring gene Protein kinase superfamily protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene ncRNA

General gene information

NM_001084974.1
NM_118582.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex PubMed 
located_in nucleus  

General protein information

Preferred Names
RAB geranylgeranyl transferase alpha subunit 1
NP_001078443.1
  • RAB geranylgeranyl transferase alpha subunit 1; FUNCTIONS IN: protein prenyltransferase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink).
NP_194180.2
  • RAB geranylgeranyl transferase alpha subunit 1 (RGTA1); FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12655059..12658348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118582.4NP_194180.2  RAB geranylgeranyl transferase alpha subunit 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194180.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DHR9, Q8VYB7, Q9M0L4, Q9SB46, Q9STU6
    UniProtKB/TrEMBL
    A0A178UYH8
    Conserved Domains (4) summary
    cd00116
    Location:507644
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:513534
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01239
    Location:160186
    PPTA; Protein prenyltransferase alpha subunit repeat
    pfam13855
    Location:535592
    LRR_8; Leucine rich repeat
  2. NM_001084974.1NP_001078443.1  RAB geranylgeranyl transferase alpha subunit 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078443.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DHR9, Q8VYB7, Q9M0L4, Q9SB46, Q9STU6
    UniProtKB/TrEMBL
    A0A178UYH8
    Conserved Domains (4) summary
    cd00116
    Location:507644
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:513534
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01239
    Location:160186
    PPTA; Protein prenyltransferase alpha subunit repeat
    pfam13855
    Location:535592
    LRR_8; Leucine rich repeat
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