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pre-B-cell leukemia transcription factor 2 isoform X1 [Danio rerio]

NCBI Reference Sequence: XP_017206849.1

Identical Proteins FASTA Graphics 

LOCUS       XP_017206849             420 aa            linear   VRT 08-SEP-2024
DEFINITION  pre-B-cell leukemia transcription factor 2 isoform X1 [Danio
            rerio].
ACCESSION   XP_017206849
VERSION     XP_017206849.1
DBLINK      BioProject: PRJNA13922
DBSOURCE    REFSEQ: accession XM_017351360.3
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007127.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Danio rerio"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="16"
     Protein         1..420
                     /product="pre-B-cell leukemia transcription factor 2
                     isoform X1"
                     /calculated_mol_wt=46190
     Region          61..251
                     /region_name="PBC"
                     /note="PBC domain; pfam03792"
                     /db_xref="CDD:461052"
     Region          253..313
                     /region_name="homeodomain"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; cd00086"
                     /db_xref="CDD:238039"
     Site            order(253..257,259,279,285,298,300..301,304..305,307..309,
                     311..312)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     Site            order(255,258,301,304..305,308)
                     /site_type="other"
                     /note="specific DNA base contacts [nucleotide binding]"
                     /db_xref="CDD:238039"
     CDS             1..420
                     /gene="pbx2"
                     /gene_synonym="pbxy; wu:fb73g03"
                     /coded_by="XM_017351360.3:37..1299"
                     /db_xref="GeneID:58136"
                     /db_xref="ZFIN:ZDB-GENE-000405-5"
ORIGIN      
        1 mlqpqqpitg ngpsasrggg lsvhpgmhpl nsihpaaqhr pdgadpagle gtenghdnrr
       61 digdilqqim titdqsldea qakkhalnch rmkpalfsvl ceikektgls mrnvqeeepp
      121 dpqlvrldnm llaegvagpe kgggaaaavs aatssggmsp dsslehsdyk sklsqirniy
      181 htelekyeqa cseftthvmn llreqsrtrp vspreiermv aiihrkfssi qtqlkqstce
      241 avmilrsrfl darrkrrnfs kqatevlney fyshlsnpyp seeakeelak qcsitvsqvs
      301 nwfgnkriry kknigkyqee anlyamktal gatqsedsph tpnstgsgsf slsgsadcfl
      361 gvppmngeqp pyhmgaqdaq srfserlyit resrtngnwq eqnsppsaas pgtdhsvdsd
//
1..420
/gene="pbx2"
/gene_synonym="pbxy; wu:fb73g03"
/coded_by="XM_017351360.3:37..1299"
/db_xref="GeneID:58136"
/db_xref="ZFIN:ZDB-GENE-000405-5"
Feature XP_017206849 : 1 segment
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