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PREDICTED: Rattus norvegicus copine family member 9 (Cpne9), transcript variant X7, mRNA

NCBI Reference Sequence: XM_063285876.1

FASTA Graphics 

LOCUS       XM_063285876            1925 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus copine family member 9 (Cpne9),
            transcript variant X7, mRNA.
ACCESSION   XM_063285876
VERSION     XM_063285876.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1925
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /note="copine family member 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 5 ESTs, 16 long SRA reads, 10 Proteins"
                     /db_xref="GeneID:297516"
                     /db_xref="RGD:1309212"
     CDS             204..1715
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /codon_start=1
                     /product="copine-9 isoform X6"
                     /protein_id="XP_063141946.1"
                     /db_xref="GeneID:297516"
                     /db_xref="RGD:1309212"
                     /translation="MYPLSRARTHQPFLDPGPSGLPAPTPVPPPALALFTAFLPSLPT
                     SRDLQKDFLGQAFLALGEVIGGQGSRVERPLTGVPGKKCGTILLTAEELSNCRDIATM
                     QLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQPFSIPVRAL
                     CNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEVLNPRKKCKKKK
                     YTNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYMSPYQ
                     LSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIE
                     GVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQT
                     KEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYV
                     DRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPNPTSAPEQP"
     polyA_site      1925
                     /gene="Cpne9"
                     /gene_synonym="RGD1309212"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tgacaacaca ctgaacccag acttcgtgcg caaattcgtt ctcgactatt tctttgagga
       61 aaagcaaaat ctccgcttcg atgtgtacaa cgtcgactct aaagccaata tctccaaacc
      121 ggtaagccag cgagccgctg gcaggttgct tgggcacata gaggctaacc tgtcaaagga
      181 cttccctgaa cacctcctcc ccaatgtacc cgctctcccg cgcgcgcacc caccagcctt
      241 tcttagatcc tggtccctct ggtctaccag cccccacccc agttcctccc cctgctctgg
      301 ctttattcac tgcctttctt ccttccctgc ctacctcgcg ggacctgcag aaggatttcc
      361 tgggacaagc attcctggcc ctgggagagg tgattggagg ccagggcagc cgtgtggagc
      421 gacctcttac gggtgtgcca ggcaagaagt gtggaaccat actgctgact gccgaggagc
      481 tcagcaactg ccgggacatt gccaccatgc agctgtgtgc aaacaagctg gacaaaaagg
      541 acttctttgg gaagtcagac cctttccttg tgttctacag gagcaatgaa gacggcacgt
      601 tcaccatctg ccacaagaca gaggttgtaa aaaacacact gaacccagta tggcagccct
      661 tcagcatccc tgtgcgggcg ctgtgcaatg gagactatga cagaacagtg aagatcgacg
      721 tatatgactg ggaccgagat ggaagccatg acttcatcgg tgagttcaca accagctacc
      781 gggagctgag caaggcccag aatcagttca cagtgtatga ggtacttaac cctcggaaga
      841 aatgcaagaa gaagaaatat accaactcgg ggaccgtgac gctcctttcc ttctctgtgg
      901 actcagaatt cacttttgtg gattacatca agggagggac gcagctgaac ttcacggtag
      961 ctattgactt cacggcttcc aacgggaacc ccctgcagcc tacctcgctg cactacatga
     1021 gtccctacca gctcagtgcc tatgccatgg ccctcaaggc agtgggagag atcatccagg
     1081 actatgacag tgacaagctc ttcccagcct atggttttgg ggccaagctg cccccagagg
     1141 ggcggatctc ccaccagttc cccctgaaca ataatgatga agaccccaac tgtgcaggca
     1201 ttgagggtgt gctggagagt tacttccaaa gtctgcgcac ggtgcagctc tatgggccca
     1261 cttactttgc gcctgtcatc aaccaggtgg ccagggctgc agccaaaatc tcggatggtt
     1321 cccagtacta cgttctgctc attatcactg atggcgtcat ctctgacatg acacagacca
     1381 aagaggccat cgtcagtgcg tcctcgctgc ccatgtctat cattattgtg ggtgttggac
     1441 ctgccatgtt tgaggcaatg gaagaactgg atggtgatga tgtgcgtgtg tcctcccggg
     1501 gacgctatgc agagcgggac atcgttcagt ttgtcccatt ccgagattat gttgaccgat
     1561 cagggaacca ggtgctgagc atggcacgac tggccaagga tgtgctagca gagattccgg
     1621 agcagctgct gtcctacatg cgcaccaggg acatccagcc tcgacctcct ccccctgcta
     1681 accccaaccc aacctcagcc ccagaacagc cctgaggatt ctgcatatcc aatgcttagt
     1741 tagcagtctg cttacttgtt tacccactgc tggaagctaa aggcccctgg agttctgaac
     1801 ctcaccagga gggccagcta ggttgatcag tgctggctga caagcttttt gtccccaact
     1861 tccgaaaagg cctggcatga tcaccaccta ccttcctatg ccaataataa agctgatctt
     1921 ctcaa
//
204..1715
/gene="Cpne9"
/gene_synonym="RGD1309212"
/codon_start=1
/product="copine-9 isoform X6"
/protein_id="XP_063141946.1"
/db_xref="GeneID:297516"
/db_xref="RGD:1309212"
/translation="MYPLSRARTHQPFLDPGPSGLPAPTPVPPPALALFTAFLPSLPT
SRDLQKDFLGQAFLALGEVIGGQGSRVERPLTGVPGKKCGTILLTAEELSNCRDIATM
QLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQPFSIPVRAL
CNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEVLNPRKKCKKKK
YTNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYMSPYQ
LSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIE
GVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQT
KEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYV
DRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPNPTSAPEQP"
Feature XM_063285876 : 1 segment
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