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NCBI Reference Sequence: XM_063285876.1
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LOCUS XM_063285876 1925 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus copine family member 9 (Cpne9), transcript variant X7, mRNA. ACCESSION XM_063285876 VERSION XM_063285876.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086022) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1925 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="4" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..1925 /gene="Cpne9" /gene_synonym="RGD1309212" /note="copine family member 9; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 16 long SRA reads, 10 Proteins" /db_xref="GeneID:297516" /db_xref="RGD:1309212" CDS 204..1715 /gene="Cpne9" /gene_synonym="RGD1309212" /codon_start=1 /product="copine-9 isoform X6" /protein_id="XP_063141946.1" /db_xref="GeneID:297516" /db_xref="RGD:1309212" /translation="MYPLSRARTHQPFLDPGPSGLPAPTPVPPPALALFTAFLPSLPT SRDLQKDFLGQAFLALGEVIGGQGSRVERPLTGVPGKKCGTILLTAEELSNCRDIATM QLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQPFSIPVRAL CNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEVLNPRKKCKKKK YTNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHYMSPYQ LSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIE GVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQT KEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYV DRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPNPTSAPEQP" polyA_site 1925 /gene="Cpne9" /gene_synonym="RGD1309212" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgacaacaca ctgaacccag acttcgtgcg caaattcgtt ctcgactatt tctttgagga 61 aaagcaaaat ctccgcttcg atgtgtacaa cgtcgactct aaagccaata tctccaaacc 121 ggtaagccag cgagccgctg gcaggttgct tgggcacata gaggctaacc tgtcaaagga 181 cttccctgaa cacctcctcc ccaatgtacc cgctctcccg cgcgcgcacc caccagcctt 241 tcttagatcc tggtccctct ggtctaccag cccccacccc agttcctccc cctgctctgg 301 ctttattcac tgcctttctt ccttccctgc ctacctcgcg ggacctgcag aaggatttcc 361 tgggacaagc attcctggcc ctgggagagg tgattggagg ccagggcagc cgtgtggagc 421 gacctcttac gggtgtgcca ggcaagaagt gtggaaccat actgctgact gccgaggagc 481 tcagcaactg ccgggacatt gccaccatgc agctgtgtgc aaacaagctg gacaaaaagg 541 acttctttgg gaagtcagac cctttccttg tgttctacag gagcaatgaa gacggcacgt 601 tcaccatctg ccacaagaca gaggttgtaa aaaacacact gaacccagta tggcagccct 661 tcagcatccc tgtgcgggcg ctgtgcaatg gagactatga cagaacagtg aagatcgacg 721 tatatgactg ggaccgagat ggaagccatg acttcatcgg tgagttcaca accagctacc 781 gggagctgag caaggcccag aatcagttca cagtgtatga ggtacttaac cctcggaaga 841 aatgcaagaa gaagaaatat accaactcgg ggaccgtgac gctcctttcc ttctctgtgg 901 actcagaatt cacttttgtg gattacatca agggagggac gcagctgaac ttcacggtag 961 ctattgactt cacggcttcc aacgggaacc ccctgcagcc tacctcgctg cactacatga 1021 gtccctacca gctcagtgcc tatgccatgg ccctcaaggc agtgggagag atcatccagg 1081 actatgacag tgacaagctc ttcccagcct atggttttgg ggccaagctg cccccagagg 1141 ggcggatctc ccaccagttc cccctgaaca ataatgatga agaccccaac tgtgcaggca 1201 ttgagggtgt gctggagagt tacttccaaa gtctgcgcac ggtgcagctc tatgggccca 1261 cttactttgc gcctgtcatc aaccaggtgg ccagggctgc agccaaaatc tcggatggtt 1321 cccagtacta cgttctgctc attatcactg atggcgtcat ctctgacatg acacagacca 1381 aagaggccat cgtcagtgcg tcctcgctgc ccatgtctat cattattgtg ggtgttggac 1441 ctgccatgtt tgaggcaatg gaagaactgg atggtgatga tgtgcgtgtg tcctcccggg 1501 gacgctatgc agagcgggac atcgttcagt ttgtcccatt ccgagattat gttgaccgat 1561 cagggaacca ggtgctgagc atggcacgac tggccaagga tgtgctagca gagattccgg 1621 agcagctgct gtcctacatg cgcaccaggg acatccagcc tcgacctcct ccccctgcta 1681 accccaaccc aacctcagcc ccagaacagc cctgaggatt ctgcatatcc aatgcttagt 1741 tagcagtctg cttacttgtt tacccactgc tggaagctaa aggcccctgg agttctgaac 1801 ctcaccagga gggccagcta ggttgatcag tgctggctga caagcttttt gtccccaact 1861 tccgaaaagg cctggcatga tcaccaccta ccttcctatg ccaataataa agctgatctt 1921 ctcaa //
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