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PREDICTED: Rattus norvegicus katanin regulatory subunit B1 (Katnb1), transcript variant X2, mRNA

NCBI Reference Sequence: XM_063277852.1

FASTA Graphics 

LOCUS       XM_063277852            2571 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus katanin regulatory subunit B1
            (Katnb1), transcript variant X2, mRNA.
ACCESSION   XM_063277852
VERSION     XM_063277852.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086037) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2571
                     /gene="Katnb1"
                     /note="katanin regulatory subunit B1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 22 ESTs, 35 long SRA reads, 1 Protein"
                     /db_xref="GeneID:291852"
                     /db_xref="RGD:1311256"
     CDS             312..2291
                     /gene="Katnb1"
                     /codon_start=1
                     /product="katanin p80 WD40 repeat-containing subunit B1
                     isoform X1"
                     /protein_id="XP_063133922.1"
                     /db_xref="GeneID:291852"
                     /db_xref="RGD:1311256"
                     /translation="MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCR
                     VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLM
                     GHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK
                     WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDL
                     EKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVA
                     DLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVTQDPVQASQPQTQQTPNPGVSLR
                     RIYERPSTTCSKPQRVKHNSESERRSPSSEDDKDERESRAEIQNAEDYNEIFQPKNSI
                     SRTPPRRSEPFPAPPEDDIATAKEASKPSPAMDVQLPVPSQEVPARPSVMTSTPAPKG
                     EPVIIPATRNEPIGLKASDFLPAVKVPQQAELVDEDAMSQIRKGHDTMCVVLTSRHKN
                     LDTVRAVWTTGDIKTSVDSAVAINDLSVVVDLLNIVNQKACLSSSLWKLDLCTTVLPQ
                     IEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCF
                     KQLKSISGLVKSRSGLSGRHGSAFRELHLLMASLD"
     polyA_site      2571
                     /gene="Katnb1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ttttgttgtg agggtcggtt gtcaagcagc gaccaatcag ggcaaaggat ggagcccagt
       61 gttgagccga gatggcccaa gcctgacatt ccatgatctg ggatcctgac ctatgtgtac
      121 aggctgctgc ttgctagcgg atgatctaaa ccaccaggca gacctgggcc aggagaggag
      181 gactctctgc ctggatgtgt gggaactccc tgccaacttg attgtcggat ctggggggga
      241 tccaccccca cccccacaga gaaagcacaa tctgttttgc gggtggggtc tcaggtgtca
      301 ccccctgaag catggccacc cctgtggtca ccaagactgc ctggaagtta caagagatcg
      361 tcgcccatgc cagcaatgtg tcctccttgg tgctgggcaa ggcctcgggg cggctattgg
      421 ccactggtgg ggatgactgt cgagtcaacc tgtggtccat aaacaagcct aactgtatca
      481 tgagtctgac aggtcacacg tcccccgtgg agagtgtccg cctcaacacc cctgaggagc
      541 tcatcgtagc tggttcccag tcgggctcca tccgcgtctg ggacctggaa gctgctaaaa
      601 ttcttcgaac actcatgggc cacaaagcca acatctgcag cctggatttc cacccctatg
      661 gcgaatttgt ggcctcaggt tcccaggaca caaacatcaa gctttgggac atcaggagaa
      721 aaggctgtgt cttccgatat agggggcaca gccaggctgt gcggtgtctc cggttcagcc
      781 ctgatgggaa gtggctggca tcagcagcag atgaccacac agtgaagctt tgggatctga
      841 cggctggcaa gatgatgtcc gagttccctg gtcatacagg gcctgtcaac gtggtggagt
      901 ttcaccccaa tgaatatctc cttgcttctg gcagctccga caggacaatc cgcttctggg
      961 acctggagaa gttccaggtg gtgagctgca ttgaagggga gccggggcct gtgaggagtg
     1021 ttctcttcaa ccctgatggc tgctgcctgt atagcggctg ccaggactcg ctgcgtgtct
     1081 acggctggga gcctgagcgc tgctttgatg tggtccttgt caactggggc aaggtggctg
     1141 acctggccat ctgcaatgac cagctgatag gtgtggcttt ctcccagagt aatgtctcct
     1201 cttatgtggt ggacctgaca agagtcacca ggacaggaac tgtgacccag gaccctgtgc
     1261 aagctagcca gcctcagaca caacagaccc ctaaccctgg tgtctccctt cgccgcatct
     1321 acgagcggcc cagcacaacc tgcagcaagc ctcagagggt aaagcacaac tcagagagtg
     1381 agcggcgcag ccccagcagt gaagatgaca aggatgagcg tgagtcgcgg gccgagatcc
     1441 agaatgcgga ggactacaat gagatcttcc agcccaagaa cagcatcagt cggacaccgc
     1501 cccggagaag tgagcccttc ccagcgcccc cagaagatga catagccaca gcaaaggagg
     1561 cctcgaaacc cagcccagcc atggatgtgc agttgccggt gccaagtcag gaggtcccag
     1621 cacgaccatc agtcatgact tccactcctg cacccaaggg tgagcctgtc atcatccctg
     1681 ccacgcggaa tgagcccatt ggcctaaagg cctcggactt cttgcccgcc gtgaaggtcc
     1741 cccagcaggc agagctggta gatgaggatg ccatgtcaca gatccgcaaa ggccacgaca
     1801 ctatgtgcgt ggtgctcacc agccgccaca agaacctgga cactgtgcga gctgtgtgga
     1861 ccacaggaga tatcaagaca tcggtggact ctgcagtggc catcaatgac ctgtctgtgg
     1921 tcgtggacct tctgaatatt gtcaaccaga aagcctgtct ctctagctcc ctgtggaagc
     1981 tggacctgtg caccactgtg ctgccccaaa ttgagaaact tctgcagagc aagtatgaga
     2041 gctatgtcca gactgggtgt acctccctca agctgatcct gcagcggttc ctacccctca
     2101 tcactgacat tttggcagcc ccgccctctg tgggtgtgga catcagccga gaggagaggc
     2161 tgcataagtg tcgactctgc ttcaagcagc tcaagagcat cagtggcctc gtcaagagca
     2221 ggtcgggttt gagcggccgc catggcagtg ccttccgtga gctgcaccta ctcatggcca
     2281 gtttggactg aggagctcat ggtgggagca ccagcagccc tcactggttt ggcctcacac
     2341 tctagtttgc tgtatgctcg tggcctgtga gcctcagcct ggcctccact cttgccccga
     2401 tggccattct ggaggcatgg ttgccagcct gctgaccacc ttctcagatg tggactcagt
     2461 tcctctccgc agtcttgtac cgcccctgct tctcagggca acgccagcct tggagctgct
     2521 gctgtaaatt atcaggcaga tttattaaat ttataactgt tcctgacttc a
//
312..2291
/gene="Katnb1"
/codon_start=1
/product="katanin p80 WD40 repeat-containing subunit B1
isoform X1"
/protein_id="XP_063133922.1"
/db_xref="GeneID:291852"
/db_xref="RGD:1311256"
/translation="MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCR
VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLM
GHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK
WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDL
EKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVA
DLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVTQDPVQASQPQTQQTPNPGVSLR
RIYERPSTTCSKPQRVKHNSESERRSPSSEDDKDERESRAEIQNAEDYNEIFQPKNSI
SRTPPRRSEPFPAPPEDDIATAKEASKPSPAMDVQLPVPSQEVPARPSVMTSTPAPKG
EPVIIPATRNEPIGLKASDFLPAVKVPQQAELVDEDAMSQIRKGHDTMCVVLTSRHKN
LDTVRAVWTTGDIKTSVDSAVAINDLSVVVDLLNIVNQKACLSSSLWKLDLCTTVLPQ
IEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCF
KQLKSISGLVKSRSGLSGRHGSAFRELHLLMASLD"
Feature XM_063277852 : 1 segment
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