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NCBI Reference Sequence: XM_063277852.1
FASTA Graphics
LOCUS XM_063277852 2571 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus katanin regulatory subunit B1 (Katnb1), transcript variant X2, mRNA. ACCESSION XM_063277852 VERSION XM_063277852.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086037) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2571 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="19" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..2571 /gene="Katnb1" /note="katanin regulatory subunit B1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 22 ESTs, 35 long SRA reads, 1 Protein" /db_xref="GeneID:291852" /db_xref="RGD:1311256" CDS 312..2291 /gene="Katnb1" /codon_start=1 /product="katanin p80 WD40 repeat-containing subunit B1 isoform X1" /protein_id="XP_063133922.1" /db_xref="GeneID:291852" /db_xref="RGD:1311256" /translation="MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCR VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLM GHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDL EKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVA DLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVTQDPVQASQPQTQQTPNPGVSLR RIYERPSTTCSKPQRVKHNSESERRSPSSEDDKDERESRAEIQNAEDYNEIFQPKNSI SRTPPRRSEPFPAPPEDDIATAKEASKPSPAMDVQLPVPSQEVPARPSVMTSTPAPKG EPVIIPATRNEPIGLKASDFLPAVKVPQQAELVDEDAMSQIRKGHDTMCVVLTSRHKN LDTVRAVWTTGDIKTSVDSAVAINDLSVVVDLLNIVNQKACLSSSLWKLDLCTTVLPQ IEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAPPSVGVDISREERLHKCRLCF KQLKSISGLVKSRSGLSGRHGSAFRELHLLMASLD" polyA_site 2571 /gene="Katnb1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttttgttgtg agggtcggtt gtcaagcagc gaccaatcag ggcaaaggat ggagcccagt 61 gttgagccga gatggcccaa gcctgacatt ccatgatctg ggatcctgac ctatgtgtac 121 aggctgctgc ttgctagcgg atgatctaaa ccaccaggca gacctgggcc aggagaggag 181 gactctctgc ctggatgtgt gggaactccc tgccaacttg attgtcggat ctggggggga 241 tccaccccca cccccacaga gaaagcacaa tctgttttgc gggtggggtc tcaggtgtca 301 ccccctgaag catggccacc cctgtggtca ccaagactgc ctggaagtta caagagatcg 361 tcgcccatgc cagcaatgtg tcctccttgg tgctgggcaa ggcctcgggg cggctattgg 421 ccactggtgg ggatgactgt cgagtcaacc tgtggtccat aaacaagcct aactgtatca 481 tgagtctgac aggtcacacg tcccccgtgg agagtgtccg cctcaacacc cctgaggagc 541 tcatcgtagc tggttcccag tcgggctcca tccgcgtctg ggacctggaa gctgctaaaa 601 ttcttcgaac actcatgggc cacaaagcca acatctgcag cctggatttc cacccctatg 661 gcgaatttgt ggcctcaggt tcccaggaca caaacatcaa gctttgggac atcaggagaa 721 aaggctgtgt cttccgatat agggggcaca gccaggctgt gcggtgtctc cggttcagcc 781 ctgatgggaa gtggctggca tcagcagcag atgaccacac agtgaagctt tgggatctga 841 cggctggcaa gatgatgtcc gagttccctg gtcatacagg gcctgtcaac gtggtggagt 901 ttcaccccaa tgaatatctc cttgcttctg gcagctccga caggacaatc cgcttctggg 961 acctggagaa gttccaggtg gtgagctgca ttgaagggga gccggggcct gtgaggagtg 1021 ttctcttcaa ccctgatggc tgctgcctgt atagcggctg ccaggactcg ctgcgtgtct 1081 acggctggga gcctgagcgc tgctttgatg tggtccttgt caactggggc aaggtggctg 1141 acctggccat ctgcaatgac cagctgatag gtgtggcttt ctcccagagt aatgtctcct 1201 cttatgtggt ggacctgaca agagtcacca ggacaggaac tgtgacccag gaccctgtgc 1261 aagctagcca gcctcagaca caacagaccc ctaaccctgg tgtctccctt cgccgcatct 1321 acgagcggcc cagcacaacc tgcagcaagc ctcagagggt aaagcacaac tcagagagtg 1381 agcggcgcag ccccagcagt gaagatgaca aggatgagcg tgagtcgcgg gccgagatcc 1441 agaatgcgga ggactacaat gagatcttcc agcccaagaa cagcatcagt cggacaccgc 1501 cccggagaag tgagcccttc ccagcgcccc cagaagatga catagccaca gcaaaggagg 1561 cctcgaaacc cagcccagcc atggatgtgc agttgccggt gccaagtcag gaggtcccag 1621 cacgaccatc agtcatgact tccactcctg cacccaaggg tgagcctgtc atcatccctg 1681 ccacgcggaa tgagcccatt ggcctaaagg cctcggactt cttgcccgcc gtgaaggtcc 1741 cccagcaggc agagctggta gatgaggatg ccatgtcaca gatccgcaaa ggccacgaca 1801 ctatgtgcgt ggtgctcacc agccgccaca agaacctgga cactgtgcga gctgtgtgga 1861 ccacaggaga tatcaagaca tcggtggact ctgcagtggc catcaatgac ctgtctgtgg 1921 tcgtggacct tctgaatatt gtcaaccaga aagcctgtct ctctagctcc ctgtggaagc 1981 tggacctgtg caccactgtg ctgccccaaa ttgagaaact tctgcagagc aagtatgaga 2041 gctatgtcca gactgggtgt acctccctca agctgatcct gcagcggttc ctacccctca 2101 tcactgacat tttggcagcc ccgccctctg tgggtgtgga catcagccga gaggagaggc 2161 tgcataagtg tcgactctgc ttcaagcagc tcaagagcat cagtggcctc gtcaagagca 2221 ggtcgggttt gagcggccgc catggcagtg ccttccgtga gctgcaccta ctcatggcca 2281 gtttggactg aggagctcat ggtgggagca ccagcagccc tcactggttt ggcctcacac 2341 tctagtttgc tgtatgctcg tggcctgtga gcctcagcct ggcctccact cttgccccga 2401 tggccattct ggaggcatgg ttgccagcct gctgaccacc ttctcagatg tggactcagt 2461 tcctctccgc agtcttgtac cgcccctgct tctcagggca acgccagcct tggagctgct 2521 gctgtaaatt atcaggcaga tttattaaat ttataactgt tcctgacttc a //
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