U.S. flag

An official website of the United States government

PREDICTED: Rattus norvegicus deuterosome assembly protein 1 (Deup1), transcript variant X10, mRNA

NCBI Reference Sequence: XM_063265333.1

FASTA Graphics 

LOCUS       XM_063265333            1671 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus deuterosome assembly protein 1
            (Deup1), transcript variant X10, mRNA.
ACCESSION   XM_063265333
VERSION     XM_063265333.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1671
                     /gene="Deup1"
                     /gene_synonym="Ccdc67; RGD1306632"
                     /note="deuterosome assembly protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 25 long SRA reads"
                     /db_xref="GeneID:315438"
                     /db_xref="RGD:1306632"
     CDS             221..1657
                     /gene="Deup1"
                     /gene_synonym="Ccdc67; RGD1306632"
                     /codon_start=1
                     /product="deuterosome assembly protein 1 isoform X7"
                     /protein_id="XP_063121403.1"
                     /db_xref="GeneID:315438"
                     /db_xref="RGD:1306632"
                     /translation="MENQAHTTAGASPCEAELQELMEQIDIMVSNKKLDWERKMRALE
                     TRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLVMTQNYEGQLQTLKAQFSK
                     LTNNFEKLRLHQMKQNQSHRKEASNKDETPFELSSLNQKIEEFRAKSREWDKQEILYQ
                     THLVSLDAQQKLLSEKCNQFQKQAQNYQTQLNGKQQRPEDSSPETPRLVCESSPGCEA
                     TQRDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKNELQ
                     SRDDLLRIIEMERLHLHRELLKMGELQTVQDNRKRVESSYSPSTKEPERKRKELFSVV
                     SDQPNHEKELNKMRSQLYQEEDLCSEQERMRNEISELTQELHQKEVTIATIMKKAALL
                     ERQLKIELEIKEKMLAKQQISDRRYKAVRTENTHLKGMMGDLDPARIKTVEASGSTLP
                     SSLSMAVDPVIGAQMDKREACWSPYVLH"
     polyA_site      1671
                     /gene="Deup1"
                     /gene_synonym="Ccdc67; RGD1306632"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tccgggttgg ttcccaccac tagaagctac tcccttgttc ccaatacagc ctaatccacc
       61 taactggcag ttttccaagg actcagagaa ctgtgaggaa gagagaggtt taaatggtgc
      121 gaatacagtg acagaggagt gagcctaacc aattcccagc tggaagttaa ctaagattaa
      181 atatcagtaa gtaccaagtc agatgtaaac atttcttggc atggagaacc aagcccatac
      241 tacggcagga gcttctcctt gtgaagctga gcttcaggaa ctgatggagc aaatcgacat
      301 catggtaagc aacaagaagc tggactggga aaggaagatg cgggctttag agacacgctt
      361 agaccttcgg gatcaagagt tggccaacgc acagacttgc ttggaccaga aaggccagga
      421 ggtggggtta cttcgacaga agctggacag tctagaaaag tgtaatctag taatgactca
      481 gaactatgaa ggacagctac agaccctaaa agcgcaattt tctaagctaa ccaataactt
      541 cgaaaagcta agattacatc agatgaagca aaaccaaagt caccggaaag aagcctccaa
      601 caaagatgaa acgccttttg aactgagcag tttgaaccag aagatagagg agttcagagc
      661 gaagtcgagg gagtgggaca agcaggagat tctctaccag acccacctgg tgtcgctgga
      721 cgctcagcaa aagttactct ctgaaaagtg caatcaattt cagaaacagg cacaaaatta
      781 ccaaactcag ctaaacggga aacagcagcg gccagaggac agcagccctg agacccctcg
      841 cctggtgtgt gagtccagtc ctggctgtga agccacgcaa agagatgagt tcattatcga
      901 aaagttaaag tcggcggtga gcgaaatagc gctgagcagg aacaagttac aggacgagaa
      961 ccagaagctc ctgcaggaac tgaagatgta ccagaggcag tgccaggcca tggaagcagg
     1021 actgtcagag gtgaagaatg agttacaatc acgtgatgat ctcctgagga taatagaaat
     1081 ggaaagacta cacttgcata gggaactgct gaaaatggga gaactgcaga ctgttcaaga
     1141 taacagaaaa agagttgagt catcatattc cccttctact aaagaaccag aaaggaaaag
     1201 aaaggagctg ttttcagtgg tctcggatca acccaatcat gaaaaggaat taaacaagat
     1261 gagaagccag ctctatcagg aggaagacct gtgctccgaa caggaacgga tgaggaacga
     1321 gatctccgaa ctcacccagg aacttcacca gaaggaggtc actatagcaa ccatcatgaa
     1381 gaaagctgcc cttctggaaa gacagctaaa gatagaatta gaaataaaag aaaaaatgtt
     1441 agcaaagcaa cagatctcag acagaagata caaagctgtc agaacagaaa acacacacct
     1501 gaagggaatg atgggagact tagaccctgc acgcatcaag acagtagaag catctggaag
     1561 cactctccct tcttccttga gcatggctgt ggatcctgtg attggagcac agatggataa
     1621 aagggaagct tgctggtctc cctatgtgct acattaaaaa cctacccgtc a
//
221..1657
/gene="Deup1"
/gene_synonym="Ccdc67; RGD1306632"
/codon_start=1
/product="deuterosome assembly protein 1 isoform X7"
/protein_id="XP_063121403.1"
/db_xref="GeneID:315438"
/db_xref="RGD:1306632"
/translation="MENQAHTTAGASPCEAELQELMEQIDIMVSNKKLDWERKMRALE
TRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLVMTQNYEGQLQTLKAQFSK
LTNNFEKLRLHQMKQNQSHRKEASNKDETPFELSSLNQKIEEFRAKSREWDKQEILYQ
THLVSLDAQQKLLSEKCNQFQKQAQNYQTQLNGKQQRPEDSSPETPRLVCESSPGCEA
TQRDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKNELQ
SRDDLLRIIEMERLHLHRELLKMGELQTVQDNRKRVESSYSPSTKEPERKRKELFSVV
SDQPNHEKELNKMRSQLYQEEDLCSEQERMRNEISELTQELHQKEVTIATIMKKAALL
ERQLKIELEIKEKMLAKQQISDRRYKAVRTENTHLKGMMGDLDPARIKTVEASGSTLP
SSLSMAVDPVIGAQMDKREACWSPYVLH"
Feature XM_063265333 : 1 segment
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.