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NCBI Reference Sequence: XM_063265333.1
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LOCUS XM_063265333 1671 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus deuterosome assembly protein 1 (Deup1), transcript variant X10, mRNA. ACCESSION XM_063265333 VERSION XM_063265333.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086026) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1671 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="8" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..1671 /gene="Deup1" /gene_synonym="Ccdc67; RGD1306632" /note="deuterosome assembly protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 25 long SRA reads" /db_xref="GeneID:315438" /db_xref="RGD:1306632" CDS 221..1657 /gene="Deup1" /gene_synonym="Ccdc67; RGD1306632" /codon_start=1 /product="deuterosome assembly protein 1 isoform X7" /protein_id="XP_063121403.1" /db_xref="GeneID:315438" /db_xref="RGD:1306632" /translation="MENQAHTTAGASPCEAELQELMEQIDIMVSNKKLDWERKMRALE TRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLVMTQNYEGQLQTLKAQFSK LTNNFEKLRLHQMKQNQSHRKEASNKDETPFELSSLNQKIEEFRAKSREWDKQEILYQ THLVSLDAQQKLLSEKCNQFQKQAQNYQTQLNGKQQRPEDSSPETPRLVCESSPGCEA TQRDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKNELQ SRDDLLRIIEMERLHLHRELLKMGELQTVQDNRKRVESSYSPSTKEPERKRKELFSVV SDQPNHEKELNKMRSQLYQEEDLCSEQERMRNEISELTQELHQKEVTIATIMKKAALL ERQLKIELEIKEKMLAKQQISDRRYKAVRTENTHLKGMMGDLDPARIKTVEASGSTLP SSLSMAVDPVIGAQMDKREACWSPYVLH" polyA_site 1671 /gene="Deup1" /gene_synonym="Ccdc67; RGD1306632" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tccgggttgg ttcccaccac tagaagctac tcccttgttc ccaatacagc ctaatccacc 61 taactggcag ttttccaagg actcagagaa ctgtgaggaa gagagaggtt taaatggtgc 121 gaatacagtg acagaggagt gagcctaacc aattcccagc tggaagttaa ctaagattaa 181 atatcagtaa gtaccaagtc agatgtaaac atttcttggc atggagaacc aagcccatac 241 tacggcagga gcttctcctt gtgaagctga gcttcaggaa ctgatggagc aaatcgacat 301 catggtaagc aacaagaagc tggactggga aaggaagatg cgggctttag agacacgctt 361 agaccttcgg gatcaagagt tggccaacgc acagacttgc ttggaccaga aaggccagga 421 ggtggggtta cttcgacaga agctggacag tctagaaaag tgtaatctag taatgactca 481 gaactatgaa ggacagctac agaccctaaa agcgcaattt tctaagctaa ccaataactt 541 cgaaaagcta agattacatc agatgaagca aaaccaaagt caccggaaag aagcctccaa 601 caaagatgaa acgccttttg aactgagcag tttgaaccag aagatagagg agttcagagc 661 gaagtcgagg gagtgggaca agcaggagat tctctaccag acccacctgg tgtcgctgga 721 cgctcagcaa aagttactct ctgaaaagtg caatcaattt cagaaacagg cacaaaatta 781 ccaaactcag ctaaacggga aacagcagcg gccagaggac agcagccctg agacccctcg 841 cctggtgtgt gagtccagtc ctggctgtga agccacgcaa agagatgagt tcattatcga 901 aaagttaaag tcggcggtga gcgaaatagc gctgagcagg aacaagttac aggacgagaa 961 ccagaagctc ctgcaggaac tgaagatgta ccagaggcag tgccaggcca tggaagcagg 1021 actgtcagag gtgaagaatg agttacaatc acgtgatgat ctcctgagga taatagaaat 1081 ggaaagacta cacttgcata gggaactgct gaaaatggga gaactgcaga ctgttcaaga 1141 taacagaaaa agagttgagt catcatattc cccttctact aaagaaccag aaaggaaaag 1201 aaaggagctg ttttcagtgg tctcggatca acccaatcat gaaaaggaat taaacaagat 1261 gagaagccag ctctatcagg aggaagacct gtgctccgaa caggaacgga tgaggaacga 1321 gatctccgaa ctcacccagg aacttcacca gaaggaggtc actatagcaa ccatcatgaa 1381 gaaagctgcc cttctggaaa gacagctaaa gatagaatta gaaataaaag aaaaaatgtt 1441 agcaaagcaa cagatctcag acagaagata caaagctgtc agaacagaaa acacacacct 1501 gaagggaatg atgggagact tagaccctgc acgcatcaag acagtagaag catctggaag 1561 cactctccct tcttccttga gcatggctgt ggatcctgtg attggagcac agatggataa 1621 aagggaagct tgctggtctc cctatgtgct acattaaaaa cctacccgtc a //
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