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PREDICTED: Homo sapiens IQ motif containing M (IQCM), transcript variant X3, mRNA

NCBI Reference Sequence: XM_054349705.1

FASTA Graphics 

LOCUS       XM_054349705            2263 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens IQ motif containing M (IQCM), transcript
            variant X3, mRNA.
ACCESSION   XM_054349705
VERSION     XM_054349705.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060928) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="4"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..2263
                     /gene="IQCM"
                     /note="IQ motif containing M; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 13 long SRA reads, 1 Protein, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:285423"
                     /db_xref="HGNC:HGNC:53443"
     CDS             477..2021
                     /gene="IQCM"
                     /codon_start=1
                     /product="IQ domain-containing protein M isoform X1"
                     /protein_id="XP_054205680.1"
                     /db_xref="GeneID:285423"
                     /db_xref="HGNC:HGNC:53443"
                     /translation="MTTEEAMPEKAKCPTLEITKQDFFQEAKTLIAQHYEKINENKVQ
                     GTSINVFRKKHQKPKSGKYIPLEIDKKVTRDVVQEHRAALRRICFPKELSKSEHLQEP
                     PQRISFKEPHIFSRRERCRPIDLITKGQVKLDKIMTIIEPVSKKMETAKQQHFEESRN
                     RMLELLYPFPVHLYLQPGTSNLELLKEPDKAFYDWRGFVLTRSFRLACDSRRVSFSQS
                     SSIFRDYYSIVCSWHINMLLIFKTFKTLIKKERQPIKPEPKSQPRIKGTPNKTDKLDS
                     KVKRIGPHIEIFQVFRERKKFMITPKLIRMVTVMQAHVRGWLERKRLQRVMTKALDHG
                     PDMKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKI
                     ERNELPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGA
                     HVPDSTLLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHY
                     KSCKVE"
ORIGIN      
        1 aaagaagaca ggcatatgtg agaagaagca atcagaagat tggcaggatt taggaatcta
       61 tttgaaatat tcattaccta ttttgaattg gtcttaaaaa tttaaagaaa tataaagctg
      121 gataattaaa gataaataat aaaggaagaa tacaaggttt ctatgctgtg aagcaactga
      181 gattattatg attttggggc agtgaatttg tttctagaag ttttgttgga actaaggcag
      241 aaaggaagaa gaacaaatga ccttggaatg aaaaacttta aggaaatatt tacgcatagg
      301 gattgcaatt attcaaaaat cattttaact tgtcatgtta atgataagag tgatgatcag
      361 caaagttact ccacctaacc actatgaatg atagtcttgt ctcaccaacc ccagcccatc
      421 atctgttgga cttggagctc acactttaaa aaagaagatc attctaactg cccctcatga
      481 ctactgaaga ggctatgcct gaaaaagcaa aatgtcctac attagagatc accaagcaag
      541 acttttttca agaagcaaaa actctcattg cccaacatta tgagaaaata aatgagaata
      601 aagttcaagg tacttctata aatgttttta gaaagaaaca ccaaaaaccg aaatctggca
      661 aatacatacc tttggagatt gacaaaaagg taacacgtga tgtggtgcaa gaacatcggg
      721 ccgcactcag aaggatttgc tttcccaagg agctttccaa aagcgagcat cttcaggaac
      781 ccccacaacg aatctccttc aaggaaccac acatttttag tagaagagaa agatgcaggc
      841 ccatagatct aattacaaaa ggacaagtta aattggataa aatcatgact attattgaac
      901 cagtgagtaa aaaaatggag acagcaaagc aacagcactt tgaggagtcc agaaacagaa
      961 tgttggaatt actctatccc tttcctgtcc atctttactt acaacctggg acctctaact
     1021 tggaacttct gaaagaacct gacaaagcat tctatgactg gagaggattt gtgctgacaa
     1081 ggtctttccg tttggcttgt gactcccgtc gagttagttt ctctcaatca tcatcaatat
     1141 ttcgggatta ttattctatt gtttgcagtt ggcatataaa catgctactg attttcaaaa
     1201 cctttaaaac ccttattaaa aaggagcgac aacctatcaa gccagaacca aaatcacaac
     1261 ccaggataaa aggtactcca aataaaactg ataaacttga cagtaaagtt aaaagaattg
     1321 gaccacacat agaaatcttc caagtgttcc gagaaagaaa aaaattcatg attaccccaa
     1381 aattgattag aatggtcacc gtcatgcagg cacatgtcag gggatggctt gaacggaaaa
     1441 gattgcaaag agtaatgacc aaggctttgg atcatggacc agatatgaaa gcagttatta
     1501 acatgtatgg cagactaatc caccgtgtta gatatcgacg tggtctttgg aggacaagac
     1561 aaattctcaa cttagcagag ctagaggagt ggatggaccg aaaaaaattc tatgaaataa
     1621 tgtttgctaa gagggaagat tggccaaaaa ttgaaagaaa tgagctcccc aatttcttca
     1681 gtgactgtgg tcatttccca actcagaaac aagttgatga tacttgggac ctggtccatc
     1741 aagatggcaa agaaaaatat tctgaactaa tcaaaaagtc caaagcaatt gaaatgttat
     1801 ttacactcta tcctcctgaa ggtgcacatg tgcctgacag tacactactc aagtcgactt
     1861 ggttgagacc catagtaaat ggggaagaag gttatagata tatagtaaat ggacatccag
     1921 cactcaaacg agctaacatc cgggttgttg gaaagttggt ggcccgatcc ataagagaaa
     1981 ggaaaatgag acaacattat aagtcatgta aagttgaatg atgtttccaa catattatta
     2041 cctgtaatag ttaaacttct ctacccaaag agacaagtta acactggagg tggatcaatt
     2101 ctgtatgagt aggaagaaag gataaaaatc tttgaatata gaaagaactt tgacaagttt
     2161 atctataatt tctagtattt ttggatgaac accattcatt tgatctcctt cataaaaaac
     2221 atctctttta tcataatgaa gtaaacctgc agagtgtcaa gta
//
477..2021
/gene="IQCM"
/codon_start=1
/product="IQ domain-containing protein M isoform X1"
/protein_id="XP_054205680.1"
/db_xref="GeneID:285423"
/db_xref="HGNC:HGNC:53443"
/translation="MTTEEAMPEKAKCPTLEITKQDFFQEAKTLIAQHYEKINENKVQ
GTSINVFRKKHQKPKSGKYIPLEIDKKVTRDVVQEHRAALRRICFPKELSKSEHLQEP
PQRISFKEPHIFSRRERCRPIDLITKGQVKLDKIMTIIEPVSKKMETAKQQHFEESRN
RMLELLYPFPVHLYLQPGTSNLELLKEPDKAFYDWRGFVLTRSFRLACDSRRVSFSQS
SSIFRDYYSIVCSWHINMLLIFKTFKTLIKKERQPIKPEPKSQPRIKGTPNKTDKLDS
KVKRIGPHIEIFQVFRERKKFMITPKLIRMVTVMQAHVRGWLERKRLQRVMTKALDHG
PDMKAVINMYGRLIHRVRYRRGLWRTRQILNLAELEEWMDRKKFYEIMFAKREDWPKI
ERNELPNFFSDCGHFPTQKQVDDTWDLVHQDGKEKYSELIKKSKAIEMLFTLYPPEGA
HVPDSTLLKSTWLRPIVNGEEGYRYIVNGHPALKRANIRVVGKLVARSIRERKMRQHY
KSCKVE"
Feature XM_054349705 : 1 segment
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