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PREDICTED: Homo sapiens ADP ribosylation factor like GTPase 13B (ARL13B), transcript variant X1, mRNA

NCBI Reference Sequence: XM_054345621.1

FASTA Graphics 

LOCUS       XM_054345621            4066 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens ADP ribosylation factor like GTPase 13B
            (ARL13B), transcript variant X1, mRNA.
ACCESSION   XM_054345621
VERSION     XM_054345621.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060927) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 19% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4066
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..4066
                     /gene="ARL13B"
                     /gene_synonym="ARL2L1; JBTS8"
                     /note="ADP ribosylation factor like GTPase 13B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 314 long SRA reads, 2 Proteins, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:200894"
                     /db_xref="HGNC:HGNC:25419"
                     /db_xref="MIM:608922"
     CDS             401..1651
                     /gene="ARL13B"
                     /gene_synonym="ARL2L1; JBTS8"
                     /codon_start=1
                     /product="ADP-ribosylation factor-like protein 13B isoform
                     X1"
                     /protein_id="XP_054201596.1"
                     /db_xref="GeneID:200894"
                     /db_xref="HGNC:HGNC:25419"
                     /db_xref="MIM:608922"
                     /translation="MLVKPQQQRESKESMEKLSSAKLVPGAADLKEYPEDVAPTVGFS
                     KINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEM
                     LRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYG
                     KKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREER
                     KQNEQEQAELDGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCH
                     LKHKMEHEQIETQGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRPSLESANGKK
                     KTKKLRMKRNHRVEPLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPLGETHHND
                     FYRKPLPPLAVPQRPNSDAHDVIS"
ORIGIN      
        1 gcttttcttt agccgggtcc cgctaactcg gctacggtgt atctgcgtct ttggtcaggt
       61 tgttccttgg ctaagagggc agtcgtcgcg gacccacgcg gttagcaagg cttagtgctc
      121 gggccggccg ccttcacttc cctcccggct tttcctcccg acttatccac tttaggggcg
      181 tctcggagtg ccggaggccc ccggggaaga gcggggtgcc ggtgtccgct ccgggctcgg
      241 atgggaagtg gtgggaggag cgacccggga tgttcagtct gatggccagt tgctgcggct
      301 ggttcaagcg gtggcgggag cctgtcaggt tggagtctcc tcggttttag tttcttcgtt
      361 ttctgcagaa aggtgactct tttgatggtg ggacttgata atgctggtaa aaccgcaaca
      421 gcaaagggaa tccaaggagt ccatggaaaa attgtcttct gcaaaactgg tccctggtgc
      481 tgctgatcta aaggaatacc ctgaagatgt agctcctact gttggatttt caaaaattaa
      541 ccttagacaa ggaaagtttg aagtcaccat ctttgacttg ggaggtggaa taagaattcg
      601 gggaatctgg aagaattact atgctgaatc ctatggggta atatttgttg tggattccag
      661 tgatgaagag agaatggaag agacaaaaga ggctatgtca gaaatgctaa gacatcctag
      721 gatatcggga aagcctatat tggtgttggc aaataaacaa gataaagaag gagctttagg
      781 agaagctgat gtcattgaat gtctatctct ggaaaaattg gtcaatgagc acaagtgcct
      841 gtgtcagata gaaccatgtt cagcaatctc ggggtatgga aagaaaattg acaagtccat
      901 taaaaaaggc ctttattggc tgctacatgt tattgcaaga gactttgatg ccttaaatga
      961 acgcatccaa aaagagacaa cagagcagcg tgctcttgag gaacaagaga aacaagaaag
     1021 agctgaacga gtgcgaaaat tacgagaaga aagaaaacaa aatgaacagg agcaggctga
     1081 actcgatgga accagtggtc tggctgagtt ggacccagaa ccaacgaatc ctttccagcc
     1141 aatagcatct gtaatcattg agaatgaagg aaaacttgaa agagagaaaa aaaaccaaaa
     1201 aatggagaaa gacagtgatg gctgccacct gaaacataaa atggagcatg agcaaataga
     1261 gacacaaggc caggttaatc acaatggcca aaaaaataat gaatttggac tagtagaaaa
     1321 ttataaggag gcattaacac agcagttaaa gaatgaagat gagacagacc ggccatcatt
     1381 ggaatcagct aatggtaaaa agaaaactaa gaaactaaga atgaaaagga accaccgggt
     1441 agaaccactt aatatagatg actgtgctcc tgagagtcca acgccacccc caccccctcc
     1501 tcctgttggc tggggaaccc ctaaagtcac tagacttcca aaacttgagc ctcttggtga
     1561 aacacatcat aatgatttct ataggaagcc actgcctccc ctggctgtgc cacagcgacc
     1621 taacagtgat gctcatgatg tgatctcata aacaagacgt atggaggagt tctcttaata
     1681 tcagcaaggt gaactgggac attcttcttt ctcagaagaa gaaacatctt gtaaattgat
     1741 gactggggca agataaccat aataatttta gtgagaagat taatactcaa ggacctgact
     1801 tgataattac ttatttgtgt ttttcatggt taaaaaaata aaagaagcac aatgaccagt
     1861 acatgaaatc agcatttgga ccaaattagc aagatttact gttgactctg gtttatacat
     1921 ccccactcat gagcatactt ctgaaggaaa actttacaaa aagagccaat ggactcagca
     1981 ctttctttac tatttgttca atagcctata tttctagata ttaaatattt tttgtaagat
     2041 atatgcacat agaaggggga cttctaggaa tttataacca aaattttaaa actattttta
     2101 tattttttta aatctttaaa aattttaatt actgtgatat tgattataca ccttttttat
     2161 agatgatttg tttaaattat atctggaaaa tagagttgat ttactttcag acatgaacta
     2221 tacaaacagg atatatttat atggcttgag gtatgttttg taatagcgtt gttctttaag
     2281 tgtacatcgt aatttgacct aatttaaaaa taatatattt tcgaagtagt agattctcag
     2341 atctttattc taacaattac atgatttgaa aacagtactc aatgagactg gaaatacctt
     2401 ttgtacctaa atgtttttta aattaatcaa aatacattct gtgagatact attaaaagtc
     2461 tcagtaaagt cctattttaa aggttagaca ctttcagaga tcaaggtgct ccctatactc
     2521 ccttgttcca tcagaagctg cagtgactct tttaggtgat tctaattctt tcatgccttg
     2581 aaattaaact atgaaattaa aggcagaaaa actggaaaac ctactgcagg tccagagact
     2641 tctgttttac aactgggaaa cagcttgtgt actaaagtaa tgagaataaa aatgttggcc
     2701 caaaattact tttataaata aataattcca aaataatttc ttaatttaaa atgatagcac
     2761 ttctcttgca cttaagaatg gcatccataa gattctgtat ttggcattta gactaacttc
     2821 tagatgtata tttttaataa tagattcata atgttacatt taattgaaaa caaaccttta
     2881 tatccaatga aaatagtata aacagaatga tttttatacc accttgttaa gattggtgct
     2941 tttggtaact tgtactgaca caacagacat gtgctagtat ctgataacat taagtacatt
     3001 ttatgtcgtt taatataatt atttacttta aaaattgtac ttcagaacat cagattttat
     3061 tcacattttt taactcactg aactttaata atcaggtcac ctgtactcta gtcagcactg
     3121 tatatattct tggagtttgt acatgggact tagcaaccac actgagtgag gtaaaagcat
     3181 ttgatttcag atctaaaatt cgtaacaacc taaatttgag aggtggctga aatgtgatga
     3241 aaagcaatac gaaaagacaa tgtaaacttt gaaaaggatt ttagagggaa aattgcatag
     3301 ctttttgtaa catttactta attttaaaac taaactcata cttttgctat ctttttaata
     3361 tttatctcgt ttgggagtat acgtgttttt aaaatttgtg ttttctatct gtttactata
     3421 gtgtagctac tggcttcatt taataaaaat aaatgatttt gaaattaaat ataatataga
     3481 attcacattt tatatagctc tctcaaaaat taatttttat tccttaagca ttttaaaaac
     3541 attttaaaaa atgttttgta aatccaggtg tattttaaca attaaatgcc tattttgtta
     3601 tatgttatac ttttattctt aattctgaat tttgacattt tcacacaata aaaataattt
     3661 atatcaatat tctgtttctc ttttcaattg gtagatttaa atgatttcct ttgggtaata
     3721 aaataggtaa agattttaaa atatgattat tgaaaaacag tttaaatcag tagattaaaa
     3781 taatgcattt ttttgatact ttacacacaa aacttttttc tctctgcaag tttttatgta
     3841 tgtgggaaag aatttgtgat tttaaatgca gctacaaata gcatttcacc atatgatgtt
     3901 agaggatttg atgtctgtct tgcgttaaag ctgttggtca acagatatgt ttttatgtat
     3961 ttaaaagagg ctcttgtgtg cctttatgtg taaaatgcat attacgtagt atacatgata
     4021 ttgtatgtaa ctgacttcaa atataaaact atgcatagaa acaaca
//
401..1651
/gene="ARL13B"
/gene_synonym="ARL2L1; JBTS8"
/codon_start=1
/product="ADP-ribosylation factor-like protein 13B isoform
X1"
/protein_id="XP_054201596.1"
/db_xref="GeneID:200894"
/db_xref="HGNC:HGNC:25419"
/db_xref="MIM:608922"
/translation="MLVKPQQQRESKESMEKLSSAKLVPGAADLKEYPEDVAPTVGFS
KINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEM
LRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYG
KKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREER
KQNEQEQAELDGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCH
LKHKMEHEQIETQGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRPSLESANGKK
KTKKLRMKRNHRVEPLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPLGETHHND
FYRKPLPPLAVPQRPNSDAHDVIS"
Feature XM_054345621 : 1 segment
Display: FASTA GenBank Help
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