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NCBI Reference Sequence: XM_039105615.2
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LOCUS XM_039105615 2788 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus endothelin 3 (Edn3), transcript variant X4, mRNA. ACCESSION XM_039105615 VERSION XM_039105615.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086021) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_039105615.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2788 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="3" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..2788 /gene="Edn3" /gene_synonym="Et3; preproET-3; RGD1564825" /note="endothelin 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 long SRA reads, 2 Proteins" /db_xref="GeneID:366270" /db_xref="RGD:2534" CDS 383..1018 /gene="Edn3" /gene_synonym="Et3; preproET-3; RGD1564825" /codon_start=1 /product="endothelin-3 isoform X4" /protein_id="XP_038961543.1" /db_xref="GeneID:366270" /db_xref="RGD:2534" /translation="MELGLWLLLGLTVTSAAGIVPCPQPGGSGRASVSQGLPEAGSER DCPETVAGPHESIVSPTAALPAQPGNAGQERGPGRSGDQEEKRVPAHHRPRRCTCFTY KDKECVYYCHLDIIWINTPEQTVPYGLSNHRGSLRGKRSSGPVPESSQSSPQTRLRCA CAGVDDKACAYFCAHVTSYSRRAEKAAAEEKQETGGPRQRLKSRTDKVHQP" polyA_site 2788 /gene="Edn3" /gene_synonym="Et3; preproET-3; RGD1564825" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cggcgtcccg gcctctctct agccctgggt gagcctgggg caaatgtgcc tctggtcagc 61 tccccccctg cgcttggaaa gcgacccccg tgagcaccag gttcaaaggc ccggcgcggc 121 agttccagcc cctccgaggg gcggggaggc gaagggggtg gtgcgggagc cagaaaagcc 181 cgagccacag ccggccagcc ctgcgcaggg atgggcagct cgctctgaaa gttcgtgacc 241 gcctcagcca actaactctg agccctggga cgcccagttc aggcagcggc aggactcgaa 301 agctgtaccc agtctcacta cccttttgcg gtcacaagcg gccaccctcc aggcccggtg 361 ctcccgcgcc tgatcggggt tcatggagct ggggctgtgg ctccttctcg ggctcacagt 421 gacctccgct gcaggtattg tgccttgccc ccagcctggg ggctctggca gagccagtgt 481 gtcccaggga ctccctgaag ctggatcaga gagggactgt ccggagactg tggctggccc 541 tcatgagagc attgtgtccc caacagctgc actgcctgca cagcctggaa atgctgggca 601 ggagcgggga ccaggcaggt ctggggacca ggaggaaaag agggtgcctg cacaccaccg 661 acctcggcgc tgcacgtgct tcacttataa ggacaaggag tgtgtctact actgccacct 721 ggacatcatc tggatcaaca ctcctgaaca gactgtgccc tatggactgt ccaaccacag 781 aggaagcctc cggggaaaga ggtcctcggg gccagttcca gaaagttccc agtcttctcc 841 acagacacgc ttacgttgtg cctgtgcagg ggtggatgac aaggcctgcg catacttctg 901 tgcacacgtc accagttatt ccaggagagc agaaaaggca gctgcagaag agaagcagga 961 gactggaggt ccacgtcaaa ggctgaagtc aaggacagat aaagtccacc agccttagct 1021 ggctttatcg gaccacaact gatgcttctt gcttcctgcg gtggatttcc cccggctctc 1081 cctgcctgcc cactctcttc caggaaagag cattcgggtt tgtgcttaca gagttgaatt 1141 tccacctctt tggggacaag gcggagaatt ggcctgaggc aaaaatgaaa gaaagaaaaa 1201 gacccatcca aagaacccct gcttacccat acaccccttc tccaagaaag cccaactgca 1261 aaagacccca gcttccctaa tgggtaaaat gatcccacat gtgccctggg agccagatgc 1321 ctgtggctcc agtttcacag ggaaatcgtt tgagaggtat gttaagtcag aaagccactt 1381 actggctttt gacacgactc ctctcggaga gtaagtggac accgggctgg ctcttcccga 1441 aagtaaacac tcatctatct ccttgaagat tcagaacacc ggtgtggcca gagcaggcct 1501 tcttctgcag tctgtgcaag ttatcgaggc ctctgtccgc ttgagacctg ggtcctagtt 1561 ggacactact ctatggattt gcagttccca ggacttagaa accttcggtt gcacttagtg 1621 ctcacgagaa gagcgtctct caaaagccaa aaggaaaaga aaacacgaga cctcggcgtt 1681 catgagatga aaaagacaga aatcaaaaca gtaacaacaa caacaaaacc ccacattctg 1741 gatggttttg aactctaggg cactcagcaa agagctgggg gttctgcaat gccctctaag 1801 gcagaactcc caaccctggc ttgtggtaag ttgctctgag cgacagctcc agctcaaagc 1861 tactatccag atatctgctt tcatgaataa atgtgcgtct tccagaagtg gcttcaaagt 1921 aaagccaaca gcacaaactc tttgtatatt atgtaaattc atgtttgact atatacaatt 1981 ggcaacaact gagaaccgta acctttgttc aaaatctctt ttagctgagc tctctgtgta 2041 gatgatgagt atggaggtgg aggtggagtc agactgtgag ttcccgtgta gacgccgctc 2101 tgcagaccca gctgggacag tctgctcacc tccccaccgg gcctcacagc cgtgagagcc 2161 tgtctttggg cgtgttccaa gggcaccacg cggagacact ttagctgttg tgtgaagtgg 2221 gaccttaacc agatggtaaa gttcagagga ccgactccta aattattaca ggtgtgaacc 2281 tgcctgctta ttggggggtg tgtgtgagag tgatggtttg ctggggggcg gggtaggggg 2341 aggatgtata gttaagagaa gtaattattt attggggaac tattttctac ttaactcctt 2401 tatgggatct attaaaagta aaagcactgt agataggtag acagacagaa aaatagattc 2461 taaaattgtg ttaaaaaaaa caaaaaccca aactcatatt tctaagtggc tagaactcgt 2521 ttagatctca taagcactat tcagcacagt ggccagattg tatctcaaag acaaatccac 2581 tcactgagag aacactcggg agataagtca aatgcacagt aaaagaaaaa tctaagtttt 2641 ctctggtttg cgggcttttc cttcaacaca tagttgcaca ttcgctcctc ataggcctct 2701 ggagaggaca ggagggagtc agagttctgg aagtaggatt catccagaga ggaaggtata 2761 gatcgagggg ggcaggcagc tattgaaa //
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