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PREDICTED: Rattus norvegicus endothelin 3 (Edn3), transcript variant X4, mRNA

NCBI Reference Sequence: XM_039105615.2

FASTA Graphics 

LOCUS       XM_039105615            2788 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus endothelin 3 (Edn3), transcript
            variant X4, mRNA.
ACCESSION   XM_039105615
VERSION     XM_039105615.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086021) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_039105615.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2788
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2788
                     /gene="Edn3"
                     /gene_synonym="Et3; preproET-3; RGD1564825"
                     /note="endothelin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 24 long SRA reads, 2
                     Proteins"
                     /db_xref="GeneID:366270"
                     /db_xref="RGD:2534"
     CDS             383..1018
                     /gene="Edn3"
                     /gene_synonym="Et3; preproET-3; RGD1564825"
                     /codon_start=1
                     /product="endothelin-3 isoform X4"
                     /protein_id="XP_038961543.1"
                     /db_xref="GeneID:366270"
                     /db_xref="RGD:2534"
                     /translation="MELGLWLLLGLTVTSAAGIVPCPQPGGSGRASVSQGLPEAGSER
                     DCPETVAGPHESIVSPTAALPAQPGNAGQERGPGRSGDQEEKRVPAHHRPRRCTCFTY
                     KDKECVYYCHLDIIWINTPEQTVPYGLSNHRGSLRGKRSSGPVPESSQSSPQTRLRCA
                     CAGVDDKACAYFCAHVTSYSRRAEKAAAEEKQETGGPRQRLKSRTDKVHQP"
     polyA_site      2788
                     /gene="Edn3"
                     /gene_synonym="Et3; preproET-3; RGD1564825"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cggcgtcccg gcctctctct agccctgggt gagcctgggg caaatgtgcc tctggtcagc
       61 tccccccctg cgcttggaaa gcgacccccg tgagcaccag gttcaaaggc ccggcgcggc
      121 agttccagcc cctccgaggg gcggggaggc gaagggggtg gtgcgggagc cagaaaagcc
      181 cgagccacag ccggccagcc ctgcgcaggg atgggcagct cgctctgaaa gttcgtgacc
      241 gcctcagcca actaactctg agccctggga cgcccagttc aggcagcggc aggactcgaa
      301 agctgtaccc agtctcacta cccttttgcg gtcacaagcg gccaccctcc aggcccggtg
      361 ctcccgcgcc tgatcggggt tcatggagct ggggctgtgg ctccttctcg ggctcacagt
      421 gacctccgct gcaggtattg tgccttgccc ccagcctggg ggctctggca gagccagtgt
      481 gtcccaggga ctccctgaag ctggatcaga gagggactgt ccggagactg tggctggccc
      541 tcatgagagc attgtgtccc caacagctgc actgcctgca cagcctggaa atgctgggca
      601 ggagcgggga ccaggcaggt ctggggacca ggaggaaaag agggtgcctg cacaccaccg
      661 acctcggcgc tgcacgtgct tcacttataa ggacaaggag tgtgtctact actgccacct
      721 ggacatcatc tggatcaaca ctcctgaaca gactgtgccc tatggactgt ccaaccacag
      781 aggaagcctc cggggaaaga ggtcctcggg gccagttcca gaaagttccc agtcttctcc
      841 acagacacgc ttacgttgtg cctgtgcagg ggtggatgac aaggcctgcg catacttctg
      901 tgcacacgtc accagttatt ccaggagagc agaaaaggca gctgcagaag agaagcagga
      961 gactggaggt ccacgtcaaa ggctgaagtc aaggacagat aaagtccacc agccttagct
     1021 ggctttatcg gaccacaact gatgcttctt gcttcctgcg gtggatttcc cccggctctc
     1081 cctgcctgcc cactctcttc caggaaagag cattcgggtt tgtgcttaca gagttgaatt
     1141 tccacctctt tggggacaag gcggagaatt ggcctgaggc aaaaatgaaa gaaagaaaaa
     1201 gacccatcca aagaacccct gcttacccat acaccccttc tccaagaaag cccaactgca
     1261 aaagacccca gcttccctaa tgggtaaaat gatcccacat gtgccctggg agccagatgc
     1321 ctgtggctcc agtttcacag ggaaatcgtt tgagaggtat gttaagtcag aaagccactt
     1381 actggctttt gacacgactc ctctcggaga gtaagtggac accgggctgg ctcttcccga
     1441 aagtaaacac tcatctatct ccttgaagat tcagaacacc ggtgtggcca gagcaggcct
     1501 tcttctgcag tctgtgcaag ttatcgaggc ctctgtccgc ttgagacctg ggtcctagtt
     1561 ggacactact ctatggattt gcagttccca ggacttagaa accttcggtt gcacttagtg
     1621 ctcacgagaa gagcgtctct caaaagccaa aaggaaaaga aaacacgaga cctcggcgtt
     1681 catgagatga aaaagacaga aatcaaaaca gtaacaacaa caacaaaacc ccacattctg
     1741 gatggttttg aactctaggg cactcagcaa agagctgggg gttctgcaat gccctctaag
     1801 gcagaactcc caaccctggc ttgtggtaag ttgctctgag cgacagctcc agctcaaagc
     1861 tactatccag atatctgctt tcatgaataa atgtgcgtct tccagaagtg gcttcaaagt
     1921 aaagccaaca gcacaaactc tttgtatatt atgtaaattc atgtttgact atatacaatt
     1981 ggcaacaact gagaaccgta acctttgttc aaaatctctt ttagctgagc tctctgtgta
     2041 gatgatgagt atggaggtgg aggtggagtc agactgtgag ttcccgtgta gacgccgctc
     2101 tgcagaccca gctgggacag tctgctcacc tccccaccgg gcctcacagc cgtgagagcc
     2161 tgtctttggg cgtgttccaa gggcaccacg cggagacact ttagctgttg tgtgaagtgg
     2221 gaccttaacc agatggtaaa gttcagagga ccgactccta aattattaca ggtgtgaacc
     2281 tgcctgctta ttggggggtg tgtgtgagag tgatggtttg ctggggggcg gggtaggggg
     2341 aggatgtata gttaagagaa gtaattattt attggggaac tattttctac ttaactcctt
     2401 tatgggatct attaaaagta aaagcactgt agataggtag acagacagaa aaatagattc
     2461 taaaattgtg ttaaaaaaaa caaaaaccca aactcatatt tctaagtggc tagaactcgt
     2521 ttagatctca taagcactat tcagcacagt ggccagattg tatctcaaag acaaatccac
     2581 tcactgagag aacactcggg agataagtca aatgcacagt aaaagaaaaa tctaagtttt
     2641 ctctggtttg cgggcttttc cttcaacaca tagttgcaca ttcgctcctc ataggcctct
     2701 ggagaggaca ggagggagtc agagttctgg aagtaggatt catccagaga ggaaggtata
     2761 gatcgagggg ggcaggcagc tattgaaa
//
383..1018
/gene="Edn3"
/gene_synonym="Et3; preproET-3; RGD1564825"
/codon_start=1
/product="endothelin-3 isoform X4"
/protein_id="XP_038961543.1"
/db_xref="GeneID:366270"
/db_xref="RGD:2534"
/translation="MELGLWLLLGLTVTSAAGIVPCPQPGGSGRASVSQGLPEAGSER
DCPETVAGPHESIVSPTAALPAQPGNAGQERGPGRSGDQEEKRVPAHHRPRRCTCFTY
KDKECVYYCHLDIIWINTPEQTVPYGLSNHRGSLRGKRSSGPVPESSQSSPQTRLRCA
CAGVDDKACAYFCAHVTSYSRRAEKAAAEEKQETGGPRQRLKSRTDKVHQP"
Feature XM_039105615 : 1 segment
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