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PREDICTED: Populus trichocarpa galactinol synthase 1 (LOC7473221), mRNA

NCBI Reference Sequence: XM_002311738.4

FASTA Graphics 

LOCUS       XM_002311738            1337 bp    mRNA    linear   PLN 08-DEC-2022
DEFINITION  PREDICTED: Populus trichocarpa galactinol synthase 1 (LOC7473221),
            mRNA.
ACCESSION   XM_002311738
VERSION     XM_002311738.4
DBLINK      BioProject: PRJNA17973
KEYWORDS    RefSeq.
SOURCE      Populus trichocarpa (Populus balsamifera subsp. trichocarpa)
  ORGANISM  Populus trichocarpa
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae;
            Populus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_037292) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 8, 2022 this sequence version replaced XM_002311738.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: Populus trichocarpa Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Populus trichocarpa"
                     /mol_type="mRNA"
                     /isolate="Nisqually-1"
                     /db_xref="taxon:3694"
                     /chromosome="8"
     gene            1..1337
                     /gene="LOC7473221"
                     /note="galactinol synthase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 80 ESTs, 29 Proteins"
                     /db_xref="GeneID:7473221"
     CDS             174..1190
                     /gene="LOC7473221"
                     /codon_start=1
                     /product="galactinol synthase 1"
                     /protein_id="XP_002311774.1"
                     /db_xref="GeneID:7473221"
                     /translation="MAPGVPIDGNILGTGKVSTVNTGYSKRAYVTFLAGNGDYVKGVV
                     GLAKGLRKVKSAYPLVVAILPDVPEEHRDILRSQGCIVREIEPIYPPENQIQFAMAYY
                     VINYSKLRIWNFEEYSKMIYLDADIQVFENIDHLFDTQDGYFYAVMDCFCEKTWSHSP
                     QYSVGYCQQCPEKITWPAEMGSPPPLYFNAGMFVFEPSRLTYESLLERLQITPPTPFA
                     EQDFLNMFFQKTYKPIPLLYNLVLAMLWRHPENVEVEKVKVVHYCAAGSKPWRYTGEE
                     ANMDREDIKMLVAKWWDIYNDESLDFNGENSVPEEETIFSRSSILSSMPEPAISYVPA
                     PTAA"
     polyA_site      1337
                     /gene="LOC7473221"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ttgaagaact caggactaaa aaggatggta gagtagcatc cttagcgttg ctggtttact
       61 ttcctaacaa tcctcaaaac cattcttctt agactctcta tacattccaa ataaccaaat
      121 ttgtactgta tagatatata gtctacgtca agcttaaata aatcctcatt aacatggccc
      181 caggagtgcc tatagatggg aatattttgg gtaccgggaa ggtttccaca gttaacactg
      241 gctattctaa gagggcctac gtgacatttt tagccggcaa cggggattat gttaaagggg
      301 tagttgggtt ggctaagggt ttgcgcaagg tgaagagtgc ataccctctt gtcgtagcaa
      361 tcttgccgga tgtgcccgag gaacaccgtg acattttgag gtctcaaggt tgcattgttc
      421 gtgagatcga gcctatttat ccacctgaga accagattca gtttgccatg gcctactacg
      481 tgatcaacta ctccaagctc cgaatttgga attttgagga gtacagcaag atgatatatt
      541 tggatgctga tatccaagtg ttcgagaata tagaccatct atttgacacc caagatggct
      601 acttctacgc cgtgatggac tgcttctgtg agaaaacatg gagccactcc cctcaatact
      661 ccgtcggcta ctgccagcag tgcccggaaa agataacatg gcctgctgag atgggctctc
      721 ctcctcccct gtacttcaat gctgggatgt ttgtatttga gcctagtcgt ttgacttatg
      781 agagccttct tgagaggctg cagatcaccc caccaacccc ctttgccgag caagatttct
      841 tgaatatgtt tttccaaaaa acatacaagc caatccctct gctttacaac ctggttttag
      901 ccatgttatg gcgacatcct gagaacgtgg aggtcgagaa ggttaaagtg gttcactact
      961 gtgctgctgg ttcaaaacct tggagatata ctggcgagga agctaacatg gatagagagg
     1021 acatcaagat gttagtggca aaatggtggg atatatataa tgatgagtcc ctcgatttca
     1081 atggcgaaaa ctcagttcca gaagaagaaa caatattctc gaggtcatcc atcttgtctt
     1141 ccatgcctga gcctgccata tcctacgtcc ctgcaccaac tgctgcttaa aacttcttag
     1201 ttaagagagt ttaaaatcaa tcttgtcttt cattatatac ctttttcagg ctacttcgcc
     1261 tgagtatttt cgtgttctgt gcaagatata taccatggta atatataaag tattacagta
     1321 tttgaacttt tatacta
//
174..1190
/gene="LOC7473221"
/codon_start=1
/product="galactinol synthase 1"
/protein_id="XP_002311774.1"
/db_xref="GeneID:7473221"
/translation="MAPGVPIDGNILGTGKVSTVNTGYSKRAYVTFLAGNGDYVKGVV
GLAKGLRKVKSAYPLVVAILPDVPEEHRDILRSQGCIVREIEPIYPPENQIQFAMAYY
VINYSKLRIWNFEEYSKMIYLDADIQVFENIDHLFDTQDGYFYAVMDCFCEKTWSHSP
QYSVGYCQQCPEKITWPAEMGSPPPLYFNAGMFVFEPSRLTYESLLERLQITPPTPFA
EQDFLNMFFQKTYKPIPLLYNLVLAMLWRHPENVEVEKVKVVHYCAAGSKPWRYTGEE
ANMDREDIKMLVAKWWDIYNDESLDFNGENSVPEEETIFSRSSILSSMPEPAISYVPA
PTAA"
Feature XM_002311738 : 1 segment
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