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GenBank: TFG84104.1
Identical Proteins FASTA Graphics
LOCUS TFG84104 453 aa linear ENV 30-MAR-2019 DEFINITION MAG: DEAD/DEAH box helicase [Erysipelotrichales bacterium]. ACCESSION TFG84104 VERSION TFG84104.1 DBLINK BioProject: PRJNA511814 BioSample: SAMN11127081 DBSOURCE accession SPCI01000001.1 KEYWORDS ENV; Metagenome Assembled Genome; MAG. SOURCE Erysipelotrichales bacterium (marine sediment metagenome) ORGANISM Erysipelotrichales bacterium Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales. REFERENCE 1 (residues 1 to 453) AUTHORS Rasigraf,O. TITLE Metagenomic analysis reveals large potential for carbon, nitrogen and sulfur cycling in coastal methanic sediments of the Bothnian Sea JOURNAL Unpublished REFERENCE 2 (residues 1 to 453) AUTHORS Rasigraf,O. TITLE Direct Submission JOURNAL Submitted (15-MAR-2019) Microbiology, Radboud University Njmegen, Heyendaalseweg, Nijmegen 6525AJ, Netherlands COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2017 Assembly Method :: MEGAHIT v. 1.1.1-2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.33x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/25/2019 17:59:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 919 CDSs (total) :: 906 Genes (coding) :: 892 CDSs (with protein) :: 892 Genes (RNA) :: 13 rRNAs :: 1 (23S) partial rRNAs :: 1 (23S) tRNAs :: 11 ncRNAs :: 1 Pseudo Genes (total) :: 14 CDSs (without protein) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 7 of 14 Pseudo Genes (incomplete) :: 1 of 14 Pseudo Genes (internal stop) :: 7 of 14 Pseudo Genes (multiple problems) :: 1 of 14 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..453 /organism="Erysipelotrichales bacterium" /isolate="das_tool.maxbin2.92" /isolation_source="Bothnian Sea sediment, site NB8" /db_xref="taxon:2478483" /environmental_sample /geo_loc_name="Sweden: Bothnian Sea" /lat_lon="63.29 N 19.49 E" /collection_date="15-Apr-2015" /collected_by="Caroline Slomp, Utrecht University" /metagenome_source="marine sediment metagenome" /note="metagenomic" Protein 1..453 /product="DEAD/DEAH box helicase" Region 8..425 /region_name="SrmB" /note="Superfamily II DNA and RNA helicase [Replication, recombination and repair]; COG0513" /db_xref="CDD:440279" CDS 1..453 /locus_tag="E4G74_00015" /coded_by="SPCI01000001.1:2583..3944" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006525464.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 msnfppilnd narrfvalng fkeltgiqse vlpyalkgrd vigisktgtg kthayliplm 61 qkldpkinev qaliiaptre laqqiydfsk mmveinpdlr iklitggvdk krtteklikq 121 phlvigtvgk ikdlfvddsl lridqattlv vdeadmilei gylkdldvia akmrdklqml 181 vfsatipdnl rpfmkkymhn phiaqvmedp kfnprithvl vpikhrdyle aalllaknin 241 pliclivcnt rtdaiklaek fqeaqirfvd lrgdmtarar kqamtlisne daqfvivtdv 301 aargidipei shvisvgfps didfyihrag rtgrtgregt cyvlysekdq naiatltkrh 361 iefkhmastd aglremkpyg eihvkrtkpq dieisklvnk rveqvkpgyk kkraaeveei 421 krkrrsemiq ksikelgkak aklkqikkte dqe //
Whole sequence Selected region from: to:
Conserved Domains
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