LOCUS TAO25970 225 aa linear BCT 25-FEB-2019
DEFINITION energy-coupling factor ABC transporter transmembrane protein
[Salmonella enterica subsp. enterica serovar Heidelberg].
ACCESSION TAO25970
VERSION TAO25970.1
DBLINK BioProject: PRJNA521409
BioSample: SAMN10887039
DBSOURCE accession SIIK01000001.1
KEYWORDS .
SOURCE Salmonella enterica subsp. enterica serovar Heidelberg
ORGANISM Salmonella enterica subsp. enterica serovar Heidelberg
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE 1 (residues 1 to 225)
AUTHORS Diarra,M.S.
TITLE Identication of primary AMR drivers in agricultural non-typhoidal
Salmonella enterica serovars using machine learning
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 225)
AUTHORS Rehman,M.A.
TITLE Direct Submission
JOURNAL Submitted (19-FEB-2019) Guelph Research and Development Center,
Agriculture and Agri-Food Canada, 93 Stone Road West, Guelph,
Ontario N1G 5C9, Canada
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2017
Assembly Method :: SPAdes v. 3.9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 133x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 02/20/2019 19:56:44
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 4,770
CDSs (total) :: 4,664
Genes (coding) :: 4,546
CDSs (with protein) :: 4,546
Genes (RNA) :: 106
rRNAs :: 8, 3, 5 (5S, 16S, 23S)
complete rRNAs :: 8 (5S)
partial rRNAs :: 3, 5 (16S, 23S)
tRNAs :: 74
ncRNAs :: 16
Pseudo Genes (total) :: 118
CDSs (without protein) :: 118
Pseudo Genes (ambiguous residues) :: 0 of 118
Pseudo Genes (frameshifted) :: 60 of 118
Pseudo Genes (incomplete) :: 52 of 118
Pseudo Genes (internal stop) :: 35 of 118
Pseudo Genes (multiple problems) :: 27 of 118
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..225
/organism="Salmonella enterica subsp. enterica serovar
Heidelberg"
/strain="3342"
/serovar="Heidelberg"
/isolation_source="fecal material"
/host="broiler chicken"
/sub_species="enterica"
/db_xref="taxon:611"
/geo_loc_name="Canada: British Columbia Fraser Valley"
/lat_lon="49.3764 N 121.8159 W"
/collection_date="2005"
/collected_by="Moussa Diarra"
Protein 1..225
/product="energy-coupling factor ABC transporter
transmembrane protein"
Region 1..225
/region_name="PRK15485"
/note="energy-coupling factor ABC transporter
transmembrane protein"
/db_xref="CDD:185382"
Site order(25..26,28..29,32..33,70,74..75,78..79,115,119,126,
129..130,135,150,154..155,157..159,161..162,165..166,
169..170,192..193,195..197,199..201,203..204,206..207,211,
214..215,221,223)
/site_type="other"
/note="S component interface [polypeptide binding]"
/db_xref="CDD:410987"
Site order(153,157,160..161,163..164,206,209..210,212..217,
220..222)
/site_type="other"
/note="A' component interface [polypeptide binding]"
/db_xref="CDD:410987"
Site order(174..181,194,197..198,201)
/site_type="other"
/note="A component interface [polypeptide binding]"
/db_xref="CDD:410987"
CDS 1..225
/locus_tag="EYS04_02815"
/coded_by="complement(SIIK01000001.1:521785..522462)"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_456575.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mtgldrlsyq srwvhvapqr kfllwlammi lafvlppvgq gielliiagl scwllrislw
61 rwcrwmaipf gfllvgviti ifsisrepqm llagisvgpy wigitragvv tanetfwrsl
121 talsatlwlv mnlpfpqlis llkrahiprl lteqilltwr flfilldeaa airraqtlrf
181 gycslpngyr slamltgllf trvlmryqqm tttldiklyq gdfhl
//