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YpfN family protein [Shigella boydii]

GenBank: RIG41494.1

Identical Proteins FASTA Graphics 

LOCUS       RIG41494                  66 aa            linear   BCT 17-SEP-2018
DEFINITION  YpfN family protein [Shigella boydii].
ACCESSION   RIG41494
VERSION     RIG41494.1
DBLINK      BioProject: PRJNA273284
            BioSample: SAMN07974670
DBSOURCE    accession QWSV01000006.1
KEYWORDS    .
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Shigella.
REFERENCE   1  (residues 1 to 66)
  AUTHORS   Gangiredla,J., Mammel,M.K., Lacher,D.W., Tartera,C., Jackson,S.A.,
            Patel,I.R., Elkins,C.A. and Mukherjee,A.
  TITLE     Draft Genome Sequences of 72 Isolates from All Four Species of
            Shigella
  JOURNAL   Microbiol Resour Announc 7 (21), e01399-18 (2018)
   PUBMED   30533843
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 66)
  AUTHORS   Gangiredla,J., Mammel,M.K., Lacher,D.W., Tartera,C., Jackson,S.A.,
            Patel,I.R., Elkins,C.A. and Mukherjee,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2018) CFSAN-ORS-DM-MMSB, US Food and Drug
            Administration, 5100 Paint Branch Parkway, College Park, MD 20740,
            USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 181x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 08/29/2018 16:58:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,395
            CDS (total)                       :: 5,322
            Genes (coding)                    :: 4,659
            CDS (coding)                      :: 4,659
            Genes (RNA)                       :: 73
            rRNAs                             :: 2, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 2 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 663
            Pseudo Genes (ambiguous residues) :: 0 of 663
            Pseudo Genes (frameshifted)       :: 270 of 663
            Pseudo Genes (incomplete)         :: 285 of 663
            Pseudo Genes (internal stop)      :: 194 of 663
            Pseudo Genes (multiple problems)  :: 82 of 663
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..66
                     /organism="Shigella boydii"
                     /strain="DMB SH20032"
                     /serotype="SB9:H14"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:621"
                     /geo_loc_name="USA: MD"
                     /lat_lon="39.04 N 76.64 W"
                     /collection_date="01-Jul-1988"
                     /collected_by="W. Reed"
                     /note="group: Shigella 2"
     Protein         1..66
                     /product="YpfN family protein"
     Region          1..62
                     /region_name="PRK13664"
                     /note="hypothetical protein; Provisional"
                     /db_xref="CDD:184221"
     CDS             1..66
                     /locus_tag="CUA56_02745"
                     /coded_by="complement(QWSV01000006.1:22076..22276)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_944558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mdwlakywwi lvivflvgvl lnvikdlkrv dhkkflankp elpphrdfnd kwdddddwpk
       61 kdqpkk
//
1..66
/locus_tag="CUA56_02745"
/coded_by="complement(QWSV01000006.1:22076..22276)"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_944558.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
Feature RIG41494 : 1 segment
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for MULTISPECIES: YpfN family protein (WP_000383836.1).

More about the gene CEH00_RS12490

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