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GenBank: RIG41494.1
Identical Proteins FASTA Graphics
LOCUS RIG41494 66 aa linear BCT 17-SEP-2018 DEFINITION YpfN family protein [Shigella boydii]. ACCESSION RIG41494 VERSION RIG41494.1 DBLINK BioProject: PRJNA273284 BioSample: SAMN07974670 DBSOURCE accession QWSV01000006.1 KEYWORDS . SOURCE Shigella boydii ORGANISM Shigella boydii Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella. REFERENCE 1 (residues 1 to 66) AUTHORS Gangiredla,J., Mammel,M.K., Lacher,D.W., Tartera,C., Jackson,S.A., Patel,I.R., Elkins,C.A. and Mukherjee,A. TITLE Draft Genome Sequences of 72 Isolates from All Four Species of Shigella JOURNAL Microbiol Resour Announc 7 (21), e01399-18 (2018) PUBMED 30533843 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 66) AUTHORS Gangiredla,J., Mammel,M.K., Lacher,D.W., Tartera,C., Jackson,S.A., Patel,I.R., Elkins,C.A. and Mukherjee,A. TITLE Direct Submission JOURNAL Submitted (29-AUG-2018) CFSAN-ORS-DM-MMSB, US Food and Drug Administration, 5100 Paint Branch Parkway, College Park, MD 20740, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.8.2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 181x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 08/29/2018 16:58:44 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,395 CDS (total) :: 5,322 Genes (coding) :: 4,659 CDS (coding) :: 4,659 Genes (RNA) :: 73 rRNAs :: 2, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1 (16S, 23S) partial rRNAs :: 2 (5S) tRNAs :: 61 ncRNAs :: 8 Pseudo Genes (total) :: 663 Pseudo Genes (ambiguous residues) :: 0 of 663 Pseudo Genes (frameshifted) :: 270 of 663 Pseudo Genes (incomplete) :: 285 of 663 Pseudo Genes (internal stop) :: 194 of 663 Pseudo Genes (multiple problems) :: 82 of 663 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..66 /organism="Shigella boydii" /strain="DMB SH20032" /serotype="SB9:H14" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:621" /geo_loc_name="USA: MD" /lat_lon="39.04 N 76.64 W" /collection_date="01-Jul-1988" /collected_by="W. Reed" /note="group: Shigella 2" Protein 1..66 /product="YpfN family protein" Region 1..62 /region_name="PRK13664" /note="hypothetical protein; Provisional" /db_xref="CDD:184221" CDS 1..66 /locus_tag="CUA56_02745" /coded_by="complement(QWSV01000006.1:22076..22276)" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_944558.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mdwlakywwi lvivflvgvl lnvikdlkrv dhkkflankp elpphrdfnd kwdddddwpk 61 kdqpkk //
Whole sequence Selected region from: to:
Conserved Domains
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