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NCBI Reference Sequence: NZ_SAHI01000038.1
FASTA Graphics
LOCUS NZ_SAHI01000038 38355 bp DNA linear CON 10-JUL-2024 DEFINITION Escherichia coli strain TZ17_2P scaffold_37, whole genome shotgun sequence. ACCESSION NZ_SAHI01000038 NZ_SAHI01000000 VERSION NZ_SAHI01000038.1 DBLINK BioProject: PRJNA224116 BioSample: SAMN10587003 Assembly: GCF_004171795.1 KEYWORDS WGS; RefSeq. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 38355) AUTHORS Zingali,T. and Djordjevic,S.P. TITLE Whole genome sequencing analysis of porcine faecal commensal Escherichia coli carrying class 1 integrons from sows and their offspring JOURNAL Unpublished REFERENCE 2 (bases 1 to 38355) AUTHORS Zingali,T. and Djordjevic,S.P. TITLE Direct Submission JOURNAL Submitted (12-DEC-2018) Faculty of Science, The ithree Institute, City Campus, University of Technology Sydney, Sydney, NSW 2007, Australia COMMENT REFSEQ INFORMATION: The reference sequence is identical to SAHI01000038.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: A5-miseq v. 20150522 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 33x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_004171795.1-RS_2024_07_10 Annotation Date :: 07/10/2024 01:41:23 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,874 CDSs (total) :: 5,772 Genes (coding) :: 5,388 CDSs (with protein) :: 5,388 Genes (RNA) :: 102 rRNAs :: 5, 5, 1 (5S, 16S, 23S) complete rRNAs :: 4, 1 (5S, 23S) partial rRNAs :: 1, 5 (5S, 16S) tRNAs :: 85 ncRNAs :: 6 Pseudo Genes (total) :: 384 CDSs (without protein) :: 384 Pseudo Genes (ambiguous residues) :: 0 of 384 Pseudo Genes (frameshifted) :: 100 of 384 Pseudo Genes (incomplete) :: 278 of 384 Pseudo Genes (internal stop) :: 48 of 384 Pseudo Genes (multiple problems) :: 39 of 384 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..38355 /organism="Escherichia coli" /mol_type="genomic DNA" /submitter_seqid="scaffold_37" /strain="TZ17_2P" /isolation_source="feces" /host="pig" /db_xref="taxon:562" /geo_loc_name="Australia" /collection_date="2017-01-30" gene complement(<1..67) /locus_tag="EXZ13_RS20230" CDS complement(<1..67) /locus_tag="EXZ13_RS20230" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_014654019.1" /GO_process="GO:0006313 - DNA transposition [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="IS1 family transposase" /protein_id="WP_096257578.1" /translation="MASVSISCPSCSATDGVVRNGK" gene complement(<122..1204) /locus_tag="EXZ13_RS20235" /pseudo CDS complement(<122..1204) /locus_tag="EXZ13_RS20235" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310347.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="YdgA family protein" gene complement(1305..2480) /gene="manA" /locus_tag="EXZ13_RS20240" CDS complement(1305..2480) /gene="manA" /locus_tag="EXZ13_RS20240" /EC_number="5.3.1.8" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416130.3" /GO_function="GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]" /GO_process="GO:0009298 - GDP-mannose biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="mannose-6-phosphate isomerase" /protein_id="WP_001170701.1" /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS SSRVQNAAGDIVSLRDVIESNKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP VAGAHPAIAHFLQQPNAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL" gene 2679..4325 /gene="fumB" /locus_tag="EXZ13_RS20245" CDS 2679..4325 /gene="fumB" /locus_tag="EXZ13_RS20245" /EC_number="4.2.1.2" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000066594.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="class I fumarate hydratase" /protein_id="WP_000066628.1" /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL PTCQDTGTAIIVGKKGQRVWTGGCDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK" gene 4468..5871 /gene="fumC" /locus_tag="EXZ13_RS20250" CDS 4468..5871 /gene="fumC" /locus_tag="EXZ13_RS20250" /EC_number="4.2.1.2" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310344.1" /GO_component="GO:0045239 - tricarboxylic acid cycle heteromeric enzyme complex [Evidence IEA]" /GO_function="GO:0004333 - fumarate hydratase activity [Evidence IEA]" /GO_process="GO:0006106 - fumarate metabolic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="class II fumarate hydratase" /protein_id="WP_001099102.1" /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF DSWVRPEQMVGSMKAGR" gene complement(5868..6797) /gene="tus" /locus_tag="EXZ13_RS20255" CDS complement(5868..6797) /gene="tus" /locus_tag="EXZ13_RS20255" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310343.1" /GO_component="GO:0005737 - cytoplasm [Evidence IEA]" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0006274 - DNA replication termination [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DNA replication terminus site-binding protein" /protein_id="WP_001295399.1" /translation="MARYDLVDRLNTTFRQMEQELAAFAAHLEQHKLLVARVFSLPEV KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV DNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLT VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD" gene complement(6873..8174) /gene="rstB" /locus_tag="EXZ13_RS20260" CDS complement(6873..8174) /gene="rstB" /locus_tag="EXZ13_RS20260" /EC_number="2.7.13.3" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310342.2" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]" /GO_process="GO:0016310 - phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase RstB" /protein_id="WP_000732526.1" /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN SSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALITFIAISLAFPVFIWMRPH WQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLAQGHYAALDMRLMERVLDNLLNNALRY CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA" gene complement(8178..8897) /gene="rstA" /locus_tag="EXZ13_RS20265" CDS complement(8178..8897) /gene="rstA" /locus_tag="EXZ13_RS20265" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416125.2" /GO_function="GO:0003677 - DNA binding [Evidence IEA]" /GO_process="GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="two-component system response regulator RstA" /protein_id="WP_001092519.1" /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE SPDLVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT TPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAA EPYRIKTVRNKGYLFAPHAWE" gene 9026..9361 /gene="ydgC" /locus_tag="EXZ13_RS20270" CDS 9026..9361 /gene="ydgC" /locus_tag="EXZ13_RS20270" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310340.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="GlpM family protein" /protein_id="WP_000524868.1" /translation="MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHY IVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWV LIICWIKLH" gene complement(9358..10080) /gene="folM" /locus_tag="EXZ13_RS20275" CDS complement(9358..10080) /gene="folM" /locus_tag="EXZ13_RS20275" /EC_number="1.5.1.50" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310339.1" /GO_function="GO:0016491 - oxidoreductase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="dihydromonapterin reductase" /protein_id="WP_000513673.1" /translation="MGKAQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI DGLIKAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKPGTPLADVL ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHVAYAASKAALD NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD YLLTSCFVTGRSFPLDGGRHLR" gene complement(10117..11499) /gene="ydgI" /locus_tag="EXZ13_RS20280" CDS complement(10117..11499) /gene="ydgI" /locus_tag="EXZ13_RS20280" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416122.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="amino acid permease" /protein_id="WP_000412379.1" /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLALGVPVWEQVKNTMLITLWVFIGVEGAV VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM MGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA SVPATWMLVG" gene complement(11685..12629) /gene="ydgH" /locus_tag="EXZ13_RS20285" CDS complement(11685..12629) /gene="ydgH" /locus_tag="EXZ13_RS20285" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310337.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF1471 family protein YdgH" /protein_id="WP_000769322.1" /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK" gene 13153..14685 /gene="pntA" /locus_tag="EXZ13_RS20290" CDS 13153..14685 /gene="pntA" /locus_tag="EXZ13_RS20290" /EC_number="7.1.1.1" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416120.1" /GO_function="GO:0008750 - proton-translocating NAD(P)+ transhydrogenase activity [Evidence IEA]" /GO_process="GO:1902600 - proton transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha" /protein_id="WP_001342403.1" /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKTAPKLITREMVDSMK AGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL LKLLCKEKDGNITVDFDDVVIRGVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE EKCACSPWRKYALMALAIILFGWLASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR KN" gene 14696..16084 /gene="pntB" /locus_tag="EXZ13_RS20295" CDS 14696..16084 /gene="pntB" /locus_tag="EXZ13_RS20295" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000014033.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0050661 - NADP binding [Evidence IEA]; GO:0008750 - proton-translocating NAD(P)+ transhydrogenase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Re/Si-specific NAD(P)(+) transhydrogenase subunit beta" /protein_id="WP_000014036.1" /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND TVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD AKASVDAILKAL" gene complement(16109..17143) /gene="tqsA" /locus_tag="EXZ13_RS20300" CDS complement(16109..17143) /gene="tqsA" /locus_tag="EXZ13_RS20300" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416118.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="AI-2 transporter TqsA" /protein_id="WP_001118231.1" /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLF MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL DVRFAFVWGLLAFAFNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI AVLLSDLNKE" gene 17555..17920 /gene="mdtJ" /locus_tag="EXZ13_RS20310" CDS 17555..17920 /gene="mdtJ" /locus_tag="EXZ13_RS20310" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310333.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0015606 - spermidine transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0015848 - spermidine transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="multidrug/spermidine efflux SMR transporter subunit MdtJ" /protein_id="WP_000276154.1" /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS YIFLSFAVKKIALGVAYALWEGIGILFITLFSVMLFDESLSLMKIAGLTTLVAGIVLI KSGTRKARKPELEVNHGAV" gene 17907..18236 /gene="mdtI" /locus_tag="EXZ13_RS20315" CDS 17907..18236 /gene="mdtI" /locus_tag="EXZ13_RS20315" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310332.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="multidrug/spermidine efflux SMR transporter subunit MdtI" /protein_id="WP_000046661.1" /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG MIMVKLA" gene complement(18275..19096) /gene="ydgD" /locus_tag="EXZ13_RS20320" CDS complement(18275..19096) /gene="ydgD" /locus_tag="EXZ13_RS20320" /EC_number="3.4.21.-" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_707495.1" /GO_function="GO:0004252 - serine-type endopeptidase activity [Evidence IEA]" /GO_process="GO:0006508 - proteolysis [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="trypsin-like serine peptidase" /protein_id="WP_001260840.1" /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR VPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRF VSNKGLWRYDIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT LPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK" gene complement(19196..19279) /locus_tag="EXZ13_RS20325" CDS complement(19196..19279) /locus_tag="EXZ13_RS20325" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_001165320.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="WP_000233090.1" /translation="MVGRYRFEFILIILILCALIAARFYLS" gene complement(19372..19680) /gene="asr" /locus_tag="EXZ13_RS20330" CDS complement(19372..19680) /gene="asr" /locus_tag="EXZ13_RS20330" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310330.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acid resistance repetitive basic protein Asr" /protein_id="WP_001443599.1" /translation="MKKVLALVVAAAMGLSSAAFAAETANTPAPTATTTKAAPAKTTH HKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHSHQQPAKPAAQPAA " gene 19951..20055 /locus_tag="EXZ13_RS31075" CDS 19951..20055 /locus_tag="EXZ13_RS31075" /inference="COORDINATES: protein motif:HMM:NF033695.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="KPN_01571 family protein" /protein_id="WP_001351109.1" /translation="MNPFIWVLIILMTLDALRELAGASSILGWLLTLV" gene complement(20104..21357) /gene="ynfM" /locus_tag="EXZ13_RS20335" CDS complement(20104..21357) /gene="ynfM" /locus_tag="EXZ13_RS20335" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416113.1" /GO_function="GO:0022857 - transmembrane transporter activity [Evidence IEA]" /GO_process="GO:0055085 - transmembrane transport [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="WP_000091840.1" /translation="MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSA GLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKP VMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAF SMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFR PTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAV VGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGML LFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNG VGAFIALMLVIALLVGTRLHRRLHA" gene 21464..22357 /gene="ynfL" /locus_tag="EXZ13_RS20340" CDS 21464..22357 /gene="ynfL" /locus_tag="EXZ13_RS20340" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310328.1" /GO_function="GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="WP_001019517.1" /translation="MNIELRHLRYFVAIAEELHFGRAAARLNISQPPLSQQIQALEQQ IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS APFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYEDILGLMRRYHL TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWP KHHEQSPAARNFRIHLLNALR" gene 22492..23712 /gene="mlc" /locus_tag="EXZ13_RS20345" /gene_synonym="dgsA" CDS 22492..23712 /gene="mlc" /locus_tag="EXZ13_RS20345" /gene_synonym="dgsA" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310327.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="sugar metabolism global transcriptional regulator Mlc" /protein_id="WP_000225276.1" /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR DLSSKLVVEESQELALKDDSPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILE LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKD AMYNGSLLIRLLQG" gene 23837..24532 /gene="bioD" /locus_tag="EXZ13_RS20350" CDS 23837..24532 /gene="bioD" /locus_tag="EXZ13_RS20350" /EC_number="6.3.3.3" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310326.2" /GO_function="GO:0005524 - ATP binding [Evidence IEA]; GO:0004141 - dethiobiotin synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]" /GO_process="GO:0009102 - biotin biosynthetic process [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="dethiobiotin synthase" /protein_id="WP_000919231.1" /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL TEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA MLRSVLAVDRVTV" gene complement(24485..25777) /gene="clcB" /locus_tag="EXZ13_RS20355" CDS complement(24485..25777) /gene="clcB" /locus_tag="EXZ13_RS20355" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001296088.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /GO_function="GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]" /GO_process="GO:0006821 - chloride transport [Evidence IEA]; GO:0010447 - response to acidic pH [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="voltage-gated ClC-type chloride channel ClcB" /protein_id="WP_073519299.1" /translation="MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWL FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQ TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWI ACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDAL LYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGG LIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVF TPTLFIGLAIGMLYGRSLRLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEM TGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS" gene complement(25936..26550) /gene="dmsD" /locus_tag="EXZ13_RS20360" CDS complement(25936..26550) /gene="dmsD" /locus_tag="EXZ13_RS20360" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_707489.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Tat proofreading chaperone DmsD" /protein_id="WP_000148710.1" /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS TLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST RFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR" gene complement(26593..27447) /gene="ynfH" /locus_tag="EXZ13_RS20365" CDS complement(26593..27447) /gene="ynfH" /locus_tag="EXZ13_RS20365" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416107.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="selenate reductase membrane anchor subunit YnfH" /protein_id="WP_000526490.1" /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIV RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS GPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLACIHSSVQQASALVP DYASLQVWRVVLLCAGLGCWVCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM TVGMAIAG" gene complement(27449..28066) /gene="ynfG" /locus_tag="EXZ13_RS20370" CDS complement(27449..28066) /gene="ynfG" /locus_tag="EXZ13_RS20370" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000213046.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DMSO reductase like molybdoenzyme iron-sulfur subunit YnfG" /protein_id="WP_000213028.1" /translation="MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGC RYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQ KHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV" gene complement(28077..30500) /gene="ynfF" /locus_tag="EXZ13_RS20375" CDS complement(28077..30500) /gene="ynfF" /locus_tag="EXZ13_RS20375" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416105.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="selenate/tellurate reductase subunit YnfF" /protein_id="WP_001342404.1" /translation="MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVR AAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRG RSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAVHV LYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDI ANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLP IRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEG PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM LSVLTGNVGINGGNSGVREGSWDLGVEWFPMLENPVKTQISVFTWTDAIDHGKEMTAT RDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTAS AKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRL GPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHYVAFRA FREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRK TYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNG EMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSH SNLVQIEKV" gene complement(30561..32987) /gene="ynfE" /locus_tag="EXZ13_RS20380" CDS complement(30561..32987) /gene="ynfE" /locus_tag="EXZ13_RS20380" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416104.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="selenate/tellurate reductase subunit YnfE" /protein_id="WP_000041687.1" /translation="MSKNERMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRSAAAAV QQAREKVVWGACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSI RRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYS SGIVGGNMTRSSPSASAVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTTD IENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWL PIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGE GDDNTAKTPQWASQITGIPVDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIA MLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSISCFSWTDAIDHGPQMTA IRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTS SAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKR LGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYK AFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWDSPER STFPLQLFGFHYKSRTHSTYGNIDVLKAACRQEVWINPIDAQKRGIANGDMVRVFNHR GEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGCVNTLTTLRPSPLAKGNPQ HTNLVEIEKI" gene complement(33186..33491) /gene="ynfD" /locus_tag="EXZ13_RS20385" CDS complement(33186..33491) /gene="ynfD" /locus_tag="EXZ13_RS20385" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_707474.2" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF1161 domain-containing protein" /protein_id="WP_001295396.1" /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSGNVSAPAQSTQDGAPAEPQ" gene 33599..34309 /gene="ynfC" /locus_tag="EXZ13_RS20390" CDS 33599..34309 /gene="ynfC" /locus_tag="EXZ13_RS20390" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416102.2" /GO_component="GO:0005886 - plasma membrane [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YnfC family lipoprotein" /protein_id="WP_001443598.1" /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRG PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG VNPAVERVYTIKNTIDYY" gene complement(34312..34872) /gene="speG" /locus_tag="EXZ13_RS20395" CDS complement(34312..34872) /gene="speG" /locus_tag="EXZ13_RS20395" /EC_number="2.3.1.57" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_310317.1" /GO_function="GO:0008080 - N-acetyltransferase activity [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="spermidine N1-acetyltransferase" /protein_id="WP_001138581.1" /translation="MPSAHSVKLRPLEREDLRYVHQLDNNASVMRYWFEEPYEAFVEL SDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATR AAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFSVEGELMHEFFINGQYRNAI RMCIFQHQYLAEHKTPGQTLLKPTAQ" gene complement(34907..35248) /gene="ynfB" /locus_tag="EXZ13_RS20400" CDS complement(34907..35248) /gene="ynfB" /locus_tag="EXZ13_RS20400" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_707472.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="DUF1283 family protein" /protein_id="WP_000705197.1" /translation="MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSR QHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRC LDRRTGRVITP" gene 35383..35709 /gene="ynfA" /locus_tag="EXZ13_RS20405" CDS 35383..35709 /gene="ynfA" /locus_tag="EXZ13_RS20405" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_416099.1" /GO_component="GO:0016020 - membrane [Evidence IEA]" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="YnfA family protein" /protein_id="WP_000598292.1" /translation="MIKTTLLFFATALCEIIGCFLPWLWLKRNASIWLLLPAGISLAL FVWLLTLHPAASGRVYAAYGGVYVCTALMWLRVVDGVKLTLYDWTGALIALCGMLIIV AGWGRT" gene 35915..>36607 /gene="rspA" /locus_tag="EXZ13_RS20410" /pseudo CDS 35915..>36607 /gene="rspA" /locus_tag="EXZ13_RS20410" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001625315.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="starvation-sensing protein RspA" gene complement(<36610..37869) /locus_tag="EXZ13_RS20415" /pseudo CDS complement(<36610..37869) /locus_tag="EXZ13_RS20415" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001686441.1" /note="incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=1 /transl_table=11 /product="site-specific integrase" gene complement(37904..38155) /locus_tag="EXZ13_RS20420" CDS complement(37904..38155) /locus_tag="EXZ13_RS20420" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000005552.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="excisionase family protein" /protein_id="WP_000005552.1" /translation="MSEVIMIVSPGKWVSEEQLIALKGIKKGTLKKAREKSFMEGREY KHVAHDGMPWDNSPCFYNLEEIDRWIERQASARPRRHLT" gene complement(38228..>38355) /locus_tag="EXZ13_RS20425" CDS complement(38228..>38355) /locus_tag="EXZ13_RS20425" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_000528968.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="3'-5' exoribonuclease domain-containing protein" /protein_id="WP_141036877.1" /translation="FDARTAIPFEGERHNALDDARYQAKYVSVIWQKLIPSQADS" CONTIG join(SAHI01000038.1:1..38355) //
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