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NCBI Reference Sequence: NZ_BMNA01000030.1
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LOCUS NZ_BMNA01000030 525 bp DNA linear CON 02-SEP-2024 DEFINITION Nakamurella endophytica strain CGMCC 4.7308 sequence30, whole genome shotgun sequence. ACCESSION NZ_BMNA01000030 NZ_BMNA01000000 VERSION NZ_BMNA01000030.1 DBLINK BioProject: PRJNA224116 BioSample: SAMD00245197 Assembly: GCF_014646215.1 KEYWORDS WGS; RefSeq; STANDARD_DRAFT. SOURCE Nakamurella endophytica ORGANISM Nakamurella endophytica Bacteria; Bacillati; Actinomycetota; Actinomycetes; Nakamurellales; Nakamurellaceae; Nakamurella. REFERENCE 1 AUTHORS Wu,L. and Ma,J. TITLE The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project: providing services to taxonomists for standard genome sequencing and annotation JOURNAL Int J Syst Evol Microbiol 69 (4), 895-898 (2019) PUBMED 30832757 REFERENCE 2 (bases 1 to 525) AUTHORS Sun,Q. and Zhou,Y. TITLE Direct Submission JOURNAL Submitted (09-SEP-2020) Contact:Qinglan Sun Institute of Microbiology, Chinese Academy of Sciences, WFCC-MIRCEN World Data Centre for Microorganisms (WDCM); No. 3, yard 1, Beichen W Rd, Ao Yun Cun, Chaoyang, Beijing, Beijing 1000101, China URL :http://www.wdcm.org/ COMMENT REFSEQ INFORMATION: The reference sequence is identical to BMNA01000030.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: gcType assembly pipeline Genome Coverage :: 100X Sequencing Technology :: Illumina HiSeq X Ten ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_014646215.1-RS_2024_09_02 Annotation Date :: 09/02/2024 04:12:38 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,369 CDSs (total) :: 4,317 Genes (coding) :: 4,269 CDSs (with protein) :: 4,269 Genes (RNA) :: 52 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 48 CDSs (without protein) :: 48 Pseudo Genes (ambiguous residues) :: 0 of 48 Pseudo Genes (frameshifted) :: 12 of 48 Pseudo Genes (incomplete) :: 39 of 48 Pseudo Genes (internal stop) :: 0 of 48 Pseudo Genes (multiple problems) :: 3 of 48 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..525 /organism="Nakamurella endophytica" /mol_type="genomic DNA" /submitter_seqid="sequence30" /strain="CGMCC 4.7308" /culture_collection="CGMCC:4.7308" /type_material="type strain of Nakamurella endophytica" /db_xref="taxon:1748367" gene complement(<1..464) /locus_tag="IEY37_RS21735" CDS complement(<1..464) /locus_tag="IEY37_RS21735" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_009778347.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="WP_188945036.1" /translation="MSHANAALTPRHRLRLARAVVEDGWTIGYAAAVFNVSWPTAKRW ADRYRQGGPAAMADRSSRPHRCPRRTPRPVIRKIVHLRWKQRLGPVPIADRLGLAAST VHAVLVRCRLNRLSHIDRVTGEPIRRYEHDRPGALLHVDVKKLGNIPDGGGWR" CONTIG join(BMNA01000030.1:1..525) //
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