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Arabidopsis thaliana other RNA (AT1G34844), lncRNA

NCBI Reference Sequence: NR_139830.1

FASTA Graphics 

LOCUS       NR_139830               1537 bp    RNA     linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana other RNA (AT1G34844), lncRNA.
ACCESSION   NR_139830
VERSION     NR_139830.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1537)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1537)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1537)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1537)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Arabidopsis thaliana"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1537
                     /locus_tag="AT1G34844"
                     /note="Natural antisense transcript overlaps with
                     AT1G34842;
                     Potential natural antisense gene, locus overlaps with
                     AT1G34842"
                     /db_xref="Araport:AT1G34844"
                     /db_xref="GeneID:5007752"
                     /db_xref="TAIR:AT1G34844"
     ncRNA           1..1537
                     /ncRNA_class="lncRNA"
                     /locus_tag="AT1G34844"
                     /product="other RNA"
                     /db_xref="GeneID:5007752"
                     /db_xref="Araport:AT1G34844"
                     /db_xref="TAIR:AT1G34844"
ORIGIN      
        1 tttttttgtc gaaaattctg gttttcatta aatgttaaac cggtacagaa ttgattgcga
       61 gtaaagcagc tttagcagct gcatctgcct tacgattgtt ttctctcttg acaaaatgaa
      121 agctaatatc agcgaaactg agagagataa aaaggatgtc atgtagaatc ccttgaagct
      181 cctttggatg aagctccccc acgattgctt cgacaagctg ctgcgagtca gaagctacaa
      241 caagtttttt gaatcctcga tttgacgcct gttggatggc agagaagaga gcgatcgcct
      301 tcgccattaa aggggaagat acctctctcg ccactgcgtg atcctggatc tcagagtgat
      361 ttgagttatc tacaaaaatc catcccaatc ccgcatcatg tgaatcctct cgccacgctg
      421 catctgtgaa acacaagatt gcatccgatt caaattccgg cacaattggt cttgaaagca
      481 gagtctggtg tccctgaggt ccagattgtc caaataatcc aggggaaaag agggtttgag
      541 ccaatttcca ccagtggtaa gcaaatcaga tgtttagccg cttcaaaacc catctgaaga
      601 ttggtaaaag tgaaggtcga aagggtattt ttgaatgggg cttgctccca gatctgtgca
      661 gcaaatagac aaaggaaaaa cagatgaaga cctgattcct ctgcactaca atgtgggcaa
      721 gcagttgtag ggttgatgcc tcgagctttc aagttggcac ctaggggtaa agcattcttc
      781 aatactttca ataagagaaa cttaattttc ggggagcatt tctttttcca tatctctgag
      841 ttccaattga ggtcacaggt tgaggtggaa cttgtgtatg aagattccgc aaagtcttag
      901 ctgcgtagta gcctgttttg gtgctataat caccagattt cgtgggaagc cagataaatt
      961 tatccctagc aacaaaccta cttggtctga actgaaagat ctctgattgg tattgaggga
     1021 ggtaagttgc aatcttttct ctattccaag acttggaaat aggacatatt aagtccttaa
     1081 cagtcatgag ttgtgtctct tgagtaggag gacccattgg ggttacggat gatgagagag
     1141 agatccatgg tgcattccaa accagggtat cagctccaga accaatcgat cttcctagtt
     1201 gggactagca tcaagagcat agatttataa aactagacat gaatccgaaa cggaagtgtt
     1261 taaacaaaac atattgatca cttcgtggct tttcaaacaa attaaaattg ttacagaatc
     1321 ttagattgat taataaaaaa agtgagagga ttaccaatac tgaagtagag tcataattgt
     1381 aaagaaatcg atgaagctgt atgtgtgaaa aaattagttc gttcatgctc aaaggtctaa
     1441 ataaaaaaga cacatacctt gacactaatt tccaacgatg tattttactt gtgagaataa
     1501 ttttgttatt tcagcaatac taaagacaca aaagaag
//
1..1537
/locus_tag="AT1G34844"
/note="Natural antisense transcript overlaps with
AT1G34842;
Potential natural antisense gene, locus overlaps with
AT1G34842"
/db_xref="Araport:AT1G34844"
/db_xref="GeneID:5007752"
/db_xref="TAIR:AT1G34844"
Feature NR_139830 : 1 segment
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