LOCUS NR_139830 1537 bp RNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana other RNA (AT1G34844), lncRNA.
ACCESSION NR_139830
VERSION NR_139830.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1537)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1537)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1537)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1537)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1537)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
FEATURES Location/Qualifiers
source 1..1537
/organism="Arabidopsis thaliana"
/mol_type="transcribed RNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1537
/locus_tag="AT1G34844"
/note="Natural antisense transcript overlaps with
AT1G34842;
Potential natural antisense gene, locus overlaps with
AT1G34842"
/db_xref="Araport:AT1G34844"
/db_xref="GeneID:5007752"
/db_xref="TAIR:AT1G34844"
ncRNA 1..1537
/ncRNA_class="lncRNA"
/locus_tag="AT1G34844"
/product="other RNA"
/db_xref="GeneID:5007752"
/db_xref="Araport:AT1G34844"
/db_xref="TAIR:AT1G34844"
ORIGIN
1 tttttttgtc gaaaattctg gttttcatta aatgttaaac cggtacagaa ttgattgcga
61 gtaaagcagc tttagcagct gcatctgcct tacgattgtt ttctctcttg acaaaatgaa
121 agctaatatc agcgaaactg agagagataa aaaggatgtc atgtagaatc ccttgaagct
181 cctttggatg aagctccccc acgattgctt cgacaagctg ctgcgagtca gaagctacaa
241 caagtttttt gaatcctcga tttgacgcct gttggatggc agagaagaga gcgatcgcct
301 tcgccattaa aggggaagat acctctctcg ccactgcgtg atcctggatc tcagagtgat
361 ttgagttatc tacaaaaatc catcccaatc ccgcatcatg tgaatcctct cgccacgctg
421 catctgtgaa acacaagatt gcatccgatt caaattccgg cacaattggt cttgaaagca
481 gagtctggtg tccctgaggt ccagattgtc caaataatcc aggggaaaag agggtttgag
541 ccaatttcca ccagtggtaa gcaaatcaga tgtttagccg cttcaaaacc catctgaaga
601 ttggtaaaag tgaaggtcga aagggtattt ttgaatgggg cttgctccca gatctgtgca
661 gcaaatagac aaaggaaaaa cagatgaaga cctgattcct ctgcactaca atgtgggcaa
721 gcagttgtag ggttgatgcc tcgagctttc aagttggcac ctaggggtaa agcattcttc
781 aatactttca ataagagaaa cttaattttc ggggagcatt tctttttcca tatctctgag
841 ttccaattga ggtcacaggt tgaggtggaa cttgtgtatg aagattccgc aaagtcttag
901 ctgcgtagta gcctgttttg gtgctataat caccagattt cgtgggaagc cagataaatt
961 tatccctagc aacaaaccta cttggtctga actgaaagat ctctgattgg tattgaggga
1021 ggtaagttgc aatcttttct ctattccaag acttggaaat aggacatatt aagtccttaa
1081 cagtcatgag ttgtgtctct tgagtaggag gacccattgg ggttacggat gatgagagag
1141 agatccatgg tgcattccaa accagggtat cagctccaga accaatcgat cttcctagtt
1201 gggactagca tcaagagcat agatttataa aactagacat gaatccgaaa cggaagtgtt
1261 taaacaaaac atattgatca cttcgtggct tttcaaacaa attaaaattg ttacagaatc
1321 ttagattgat taataaaaaa agtgagagga ttaccaatac tgaagtagag tcataattgt
1381 aaagaaatcg atgaagctgt atgtgtgaaa aaattagttc gttcatgctc aaaggtctaa
1441 ataaaaaaga cacatacctt gacactaatt tccaacgatg tattttactt gtgagaataa
1501 ttttgttatt tcagcaatac taaagacaca aaagaag
//